2006
December
- Modern chemistry in the CDK: beyond the two-atom bond
- Updated Chemical Blogspace Layout and Software
- Chemistry in HTML: Greasemonkey again
- SMILES, CAS and InChI in blogs: Greasemonkey
- Counting constitutional isomers from the molecular formula
- Molecular Chemometrics
- Including SMILES, CML and InChI in blogs
- H-index in chemoinformatics
- The power of big numbers
- Chemo::Blogs #2
November
- Code coverage: making sure your code is tested
- German Conference on Chemoinformatics 2006: Day 3
- German Conference on Chemoinformatics 2006: Day 1 and 2
- Organic chemists can now tune properties without changing the molecular structure??
- When is open source chemoinformatics successful?
- Chemical Blogspace updates
- Bioclipse Workshop: short but productive
- The Bioclipse Workshop is in progress
October
- Opensource Chemistry and Opensource Chemoinformatics
- Running single JUnit tests in Eclipse
- Being a good opensource user
- Are chemogenomics and proteochemometrics the same?
- Google's new search engine: /* Code Search */
- Bioinformatics: Open Source or Open Access??
September
- CompLife'06 - Day 1
- CDK Bug Squash Party - Day 5
- CDK Bug Squash Party - Day 3 and 4
- CDK Bug Squash Party - Day 2
- CDK Bug Squash Party - Day 1
- Chemo::Blogs #1
- Complex PDB documents using the Bioclipse ChildResourceCreator
- "Jmol and the CDK add powerful chemical capabilities", says Munos in Nature Reviews Drug Discovery
- Chemical Archeology: OSCAR3 to NMRShiftDB.org
- BioJava 1.5 beta released
- Calculating geometrical properties with the CDK
August
- R News special issue on chemistry
- Chemical blogspace
- Bioclipse gets a new extension point
- CML Explained
- Small java applet for 2D structure drawing
- Classpath 0.92 has been released
- Fortran and XML: FoX reads and writes CML
- new Atom(Elements.CARBON);
- BlueObelisk components in Japanese
- CDK and the Java 6 beta
July
- Context help in Bioclipse
- Matrix support in Bioclipse
- AVI movies of CMLRSS howto in Bioclipse
- New chemistry-on-the-desktop blog
June
- KDE4 keyword support mockups
- Text mining for chemistry using OSCAR3
- Strigi gets kfile plugin support
- Dutch Summer of Code sponsors a Bioclipse project
- KDE desktop search: Kat, Strigi and Tenor
- A chemistry extension for spreadsheet(s)
- Recent Developments of the Chemistry Development Kit
May
- Blue Obelisk in Obernai at Chemoinformatics in Europe
- Molecular indexing on the KDE and OS/X desktops
- XML validation on Eclipse with Web Tools Platform
- A live life-sciences CD
- Taverna runs with Classpath 0.91
- New open access journal Source Code for Biology and Medicine
- Open Text Mining Interface and Bioclipse
- Four graph mining methods integrated in ParMol
- Nightly CDK builds now available
April
- Protein support in Bioclipse using Jmol and the CDK
- Download statistics for chemblaics components
- Postgenomic.com maps upcoming conferences
- The CDK data classes and change notifications
- Getting Jmol's 'cartoon on' to work in Bioclipse
- Mining the KEGG pathway database with self-organizing maps
- Uncertainty in NMR based 3D protein models
- Free online ChemConf 2006 conference
March
- InChI's in LaTex and CDK News
- The Cologne University BioInformatics Center (CUBIC)
- How to make money from Open Source scientific software
- The PDB protein database uses Jmol
- Open source in drug discovery
- More chemistry in KDE
- Classpath 0.90 makes the Jmol application run
- Progress with CMLRSS plugin for Bioclipse
February
- Open source Jmol taking over the world
- Hacking InChI support into postgenomic.com
- Novel QSAR and QSPR descriptors?
- BlueObelisk: OpenSource, OpenData and OpenStandards
- Blogging chemistry on blogspot.com
- Chemical reactions in CML
- Hot articles; mining the semantic web
- Kalzium Wins Award; Carsten Niehaus Interviewed
- A test suite for free, open source JVMs
- Tagging blog items
- A blog about bioinformatics, semantic web, comics and social networks.
- Skype on Kubuntu using a Tiptel USB telephone
- Dutch Google News themes messed up
- Open source Jmol hits student text book Biochemistry