Some time ago I wrote about using Bioclipse to query to MyExperiment.org SPARQL end point . I think I had not mentioned that I have also written a manager to download MyExperiment Bioclipse Scripting Language scripts (though there are no GUI elements yet):

> myexperiment.search("RDF")
[921, 928, 889]

> myexperiment.search("Kabsch")
[937]

The returned lists give the workflow numbers for matching BSL scripts, which you can then simply download with:

> var file = myexperiment.downloadWorkflow(937)
ui.open(file)

This post was originally posted as https://chem-bla-ics.blogspot.com/2009/11/bioclipse-manager-for-myexperimentorg.html.