Version 2.12 of the Chemistry Development Kit has been released. It is the last release with contributions by our NWO Open Science grant. This release adds some nice new APIs:

  • harmonize hydrogens to various states: depiction, stereo, minimal, and unsafe (useful for depictions)
  • generate wedge bonds based on coordinates and stereochemistry
  • more Markush / RGroup support
  • atropisomers via CXSMILES
  • sugar extraction

I also update the following libraries/tools to use CDK 2.12: