Just updated Bioclipse2 with Jmol 11.6 RC 18:

Now working in Uppsala makes Bioclipse my default life sciences platform, and I’ll be porting older Bioclipse1 plugins to Bioclipse2, which has a much better architecture.

Bioclipse2 does not have a native Jmol Console, but script commands can easily be run with jmol.run() (written by Jonathan). I wonder if it would be hard to have a JmolScript view like this JavaScript Console… The outline on the right (written by Ola) allows me to navigate the Jmol data model.

This post was originally posted as https://chem-bla-ics.blogspot.com/2008/10/jmol-116-rc-18-in-bioclipse.html.