• Feb 11, 2010
  • Feb 9, 2010

    ChEMBL RDF #1:SPARQL end point

    In a series of SPARQL end points , I am happy to present a new Virtuoso 6.1-hosted SPARQL end point for the ChEMBL database (CC-BY-SA), at our groups new rdf.farmbio.uu.se server. The server is hosting 23.8M triples, with the data based on ChEMBL 02. There is a SPARQL end point, as well as a SNORQL interface: less than 1 minute read
  • Feb 7, 2010

    RDF, Jena, Bioclipse, Eclipse, Zest: Mashups

    Quite a while a go, I blogged about Zest in Bioclipse showing a bit of ONS Solubility data . I could not follow up on that until now, as I had yet to do a lot of RDF work in Bioclipse, so the screenshot back then was kind of a mockup. less than 1 minute read
  • Feb 7, 2010

    Average time on Site: chem-bla-ics

    Cameron freeded(?) on the Spanish and Dutch sticking around longest on his site. I’ve never used Google Analytics for that, but it’s good time spent on procrastination: it makes nice graphics: less than 1 minute read
  • Feb 5, 2010

    UU Cheminformatics Journal Club

    Following the steps of the IU Cheminformatics Journal Club, I have started a UU Cheminformatics Journal Club: 1 minute read
  • Feb 3, 2010

    CDK 1.3.2: the changes

    I promise I will write up more useful changelogs, and will actually try to do so in the excellent way Bob Hanson has been doing for Jmol: by example. For now, the following will have to do. These are the changes after release 1.3.1, which include all the changes in release 1.2.5: 6 minute read
  • Feb 3, 2010