<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="https://chem-bla-ics.linkedchemistry.info/feed/by_tag/science.xml" rel="self" type="application/atom+xml" /><link href="https://chem-bla-ics.linkedchemistry.info/" rel="alternate" type="text/html" /><updated>2026-06-15T12:00:19+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/feed/by_tag/science.xml</id><title type="html">chem-bla-ics</title><subtitle>Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.</subtitle><author><name>Egon Willighagen</name></author><entry><title type="html">Oxford…</title><link href="https://chem-bla-ics.linkedchemistry.info/2010/08/01/oxford.html" rel="alternate" type="text/html" title="Oxford…" /><published>2010-08-01T00:00:00+00:00</published><updated>2010-08-01T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2010/08/01/oxford</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2010/08/01/oxford.html"><![CDATA[<p>Yesterday I arrived in <a href="http://en.wikipedia.org/wiki/Oxford">Oxford</a>, after a 3.5 hour bus transfer from
<a href="http://en.wikipedia.org/wiki/London_Stansted_Airport">London Stansted</a>. Long, boring ride (though I might have seen a few
<a href="https://web.archive.org/web/20100728051221/http://www.rspb.org.uk/wildlife/birdguide/name/r/redkite/index.aspx">red kites <i class="fa-solid fa-box-archive fa-xs"></i></a>, but seeing that they were near extinct, I am
wondering what other large bird of prey has strong split tail like a swallow). Showed once more that the UK infrastructure has
hardly changed since the 19th century. Enjoying an undergraduate room at one of the colleges. Pretty basic, but makes me feel
more like a human than a tourist. Yes!, undergraduate students are human too! One of the advantages is you get an excellent
internet connection :)</p>

<p>Anyways, going to the <a href="https://web.archive.org/web/20111001000000*/http://echeminfo.com/comty_oxfordadmet10">Predictive Toxicology <i class="fa-solid fa-box-archive fa-xs"></i></a> workshop, thanx to the bursary award I received from
<a href="https://web.archive.org/web/20110207193345/http://echeminfo.com/">echeminfo <i class="fa-solid fa-box-archive fa-xs"></i></a>
(see <a href="http://chem-bla-ics.blogspot.com/2010/03/oxford-august-2010-echeminfo-predictive.html">Oxford, August 2010: eCheminfo Predictive ADME &amp; Toxicology 2010 Workshop</a>).</p>

<p>This afternoon I walked around a bit, watching all the old buildings. But I guess being here without anyone to share it with,
and that it looks just like <a href="http://en.wikipedia.org/wiki/Cambridge">Cambridge</a>, makes me not-so-much impressed. Moreover, it’s too
busy with tourists and people randomly wearing Oxford University sweatshirts. Small and nice was the
<a href="http://www.mhs.ox.ac.uk/">Museum of the History of Science</a>, with some nice chemical pieces, like this one:</p>

<p><img src="/assets/images/DSCI0089.JPG" alt="" /></p>

<p>Buildings like the <a href="http://en.wikipedia.org/wiki/Radcliffe_Camera">Radcliffe Camera</a> are nice on the outside, but closed.
Seems I have to become a fellow first. This is what it looked like today:</p>

<p><img src="/assets/images/DSCI0094.JPG" alt="" /></p>

<p>Quite interesting too was the Oxford University Press shop. I’m a sucker for books. Apparently, you can just write a book
and publish it. For example, an extensive list of <a href="http://ukcatalogue.oup.com/category/academic/series/general/opr.do">dictionaries on about anything</a>…
and since I have been writing several book chapters right now, perhaps this is actually an interesting route…</p>

<p>But the question is, of course, how long will we keep reading books… they’re the
<a href="https://blogs.ch.cam.ac.uk/pmr/2008/04/29/why-pdf-is-a-hamburger/">hamburgers <i class="fa-solid fa-recycle fa-xs"></i></a> of educational material… Kindle and alikes will soon drop in
price, and cost some €30 euro. But e-book prices will have to drop too, and I still do not get why an e-book is more expensive than a paperback…
(see <a href="http://chem-bla-ics.blogspot.com/2010/07/amazon-kindle-edition-is-more-expensive.html">Amazon, the Kindle edition is more expensive than the paperback??</a>).
But then again… they are rich, and I am not.</p>

<p>There was some recent talk about the fact that no one can be Open to the full. You either do Open Data or Open Source, and
make a living from the rest. That’s where I nicely show I know bullocks of economics. I do
<a href="http://bodr.sf.net/">BODR</a>, <a href="http://cdk.sf.net/">CDK</a>, … all Open, all for free.</p>

<p>OK. That’s a plus for Oxford… it makes you think about things. Perhaps there is something to
<a href="http://en.wikipedia.org/wiki/Morphic_field#Morphogenetic_field">morphogenetic</a> fields…</p>]]></content><author><name>Egon Willighagen</name></author><category term="oxford" /><category term="oxfordadmet2010" /><category term="publishing" /><category term="science" /><category term="toxicology" /><category term="conference" /><summary type="html"><![CDATA[Yesterday I arrived in Oxford, after a 3.5 hour bus transfer from London Stansted. Long, boring ride (though I might have seen a few red kites , but seeing that they were near extinct, I am wondering what other large bird of prey has strong split tail like a swallow). Showed once more that the UK infrastructure has hardly changed since the 19th century. Enjoying an undergraduate room at one of the colleges. Pretty basic, but makes me feel more like a human than a tourist. Yes!, undergraduate students are human too! One of the advantages is you get an excellent internet connection :)]]></summary></entry><entry><title type="html">Google Scholar allows downloading as BibTeX</title><link href="https://chem-bla-ics.linkedchemistry.info/2010/02/17/google-scholar-allows-downloading-as.html" rel="alternate" type="text/html" title="Google Scholar allows downloading as BibTeX" /><published>2010-02-17T00:00:00+00:00</published><updated>2010-02-17T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2010/02/17/google-scholar-allows-downloading-as</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2010/02/17/google-scholar-allows-downloading-as.html"><![CDATA[<p> </p>

<p><img src="/assets/images/googleScholar.png" alt="" /></p>]]></content><author><name>Egon Willighagen</name></author><category term="google" /><category term="science" /><summary type="html"><![CDATA[ ]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/googleScholar.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/googleScholar.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry><entry><title type="html">Nature Jobs - Google Map mashup</title><link href="https://chem-bla-ics.linkedchemistry.info/2009/04/07/nature-jobs-google-map-mashup.html" rel="alternate" type="text/html" title="Nature Jobs - Google Map mashup" /><published>2009-04-07T00:00:00+00:00</published><updated>2009-04-07T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2009/04/07/nature-jobs-google-map-mashup</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2009/04/07/nature-jobs-google-map-mashup.html"><![CDATA[<p>Nothing much I need to say about the <a href="http://www.nature.com/naturejobs/science/map">NatureJobs Interactive World Map</a>,
I think. Thanx to <a href="http://pimm.wordpress.com/">Partial Immortalization</a> for the
<a href="http://friendfeed.com/e/7e1c5170-056f-aa14-185d-7a1d2ec6d158/checking-Naturejobs-Interactive-World-Map-http/">link on FriendFeed</a>!</p>

<p><img src="/assets/images/naturejobs.png" alt="" /></p>]]></content><author><name>Egon Willighagen</name></author><category term="science" /><summary type="html"><![CDATA[Nothing much I need to say about the NatureJobs Interactive World Map, I think. Thanx to Partial Immortalization for the link on FriendFeed!]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/naturejobs.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/naturejobs.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry><entry><title type="html">Science Blogging 2008 London was Cool!</title><link href="https://chem-bla-ics.linkedchemistry.info/2008/08/31/science-blogging-2008-london-was-cool.html" rel="alternate" type="text/html" title="Science Blogging 2008 London was Cool!" /><published>2008-08-31T00:00:00+00:00</published><updated>2008-08-31T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2008/08/31/science-blogging-2008-london-was-cool</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2008/08/31/science-blogging-2008-london-was-cool.html"><![CDATA[<p>Definately not a <em>first post</em>, but here are my experiences of my <a href="http://network.nature.com/group/sciblog2008">first blogging conference</a>
(see also <a href="https://chem-bla-ics.linkedchemistry.info/2008/08/29/leaving-to-science-blogging-2008-london.html">this <i class="fa-solid fa-recycle fa-xs"></i></a>
and <a href="https://chem-bla-ics.linkedchemistry.info/2008/07/10/going-to-science-blogging-2008-london.html">this <i class="fa-solid fa-recycle fa-xs"></i></a>,
the latter using semantic markup for the event): it was fun! My suggested unconference was not chosen, because I, as I usually do,
focus to much on how instead of why one wants to do something. Nevertheless, I got to say my things, so I won’t complain. While I
have not noted a vivid live coverage in blogosphere of the conference, several people were
<a href="https://web.archive.org/web/20080910235107/https://friendfeed.com/rooms/science-blogging-2008">live covering the meeting <i class="fa-solid fa-box-archive fa-xs"></i></a>
on <a href="https://web.archive.org/web/20080828171106/http://friendfeed.com/">FriendFeed <i class="fa-solid fa-box-archive fa-xs"></i></a>. Really nice, because you can comment on statements the speaker makes, while he is talking.
People have been using the <em>sciblog</em> tag, which should give you enough hits in the various aggregators and social sites.</p>

<p>The main thing I liked about this conference was the chance to meet fellow bloggers. I am not so much interested in why others blog,
and generally not reading blogs about the scientific life. I have written up in the past why I blog, so read
<a href="https://chem-bla-ics.linkedchemistry.info/2007/01/11/why-do-i-blog.html">that <i class="fa-solid fa-recycle fa-xs"></i></a>.
What does interest me is how we can enhance blogs to make them
easier to aggregate, search through, retrieve data, etc, etc. What I’d like to be able to do is read a blog item, note that it is
about topic I like, go of into <a href="http://taverna.sf.net/">Taverna</a> or <a href="http://www.bioclipse.net/">Bioclipse</a> (possible via
<a href="http://rguha.wordpress.com/2008/08/30/ubiquity-and-chemical-information/">Ubiquity</a>), and hit the <em>get me that data blob</em> button.
Now, I don’t mind it being hidden behind a paper, being on Google Data, or whatever, I just want to simply hit that button.</p>

<p>Returning readers of this blog that semantic chemistry is something I have worked on in the past, but while
<a href="https://web.archive.org/web/20080723211045/http://cb.openmolecules.net/">Chemical blogspace <i class="fa-solid fa-box-archive fa-xs"></i></a> has a nice
<a href="https://web.archive.org/web/20080723221106/http://cb.openmolecules.net/inchis.php">people-blogged-about-this-molecule <i class="fa-solid fa-box-archive fa-xs"></i></a>
section, it has not really picked up. Main reason is, that people cannot or do not want to add semantic markup. Now, the one thing
I like most of the conference discussions yesterday (the pub was too noisy for me to reasonably chat with anyone), was the proposal
to use Ubiquity for adding these semantics. So, commands like <code class="language-plaintext highlighter-rouge">addSechemticMarkup</code>, <code class="language-plaintext highlighter-rouge">convertSMILESIntoInChIKey</code>, that sort of
things… The cool thing here, is that it is blogging service independent. It works for anything inside Firefox, including
wikis, email, knols, whatever. Now, one obstacle is that Ubiquity involves a command line; and we know how much people dislike
command lines, but I’m sure they will come up with Guiquity. Actually, maybe this is the
<a href="http://www.kaply.com/weblog/2008/04/29/update-on-activities-microformats-and-operator/">activities</a> that Mike has been talking about…</p>]]></content><author><name>Egon Willighagen</name></author><category term="blog" /><category term="science" /><category term="friendfeed" /><summary type="html"><![CDATA[Definately not a first post, but here are my experiences of my first blogging conference (see also this and this , the latter using semantic markup for the event): it was fun! My suggested unconference was not chosen, because I, as I usually do, focus to much on how instead of why one wants to do something. Nevertheless, I got to say my things, so I won’t complain. While I have not noted a vivid live coverage in blogosphere of the conference, several people were live covering the meeting on FriendFeed . Really nice, because you can comment on statements the speaker makes, while he is talking. People have been using the sciblog tag, which should give you enough hits in the various aggregators and social sites.]]></summary></entry><entry><title type="html">Leaving to Science Blogging 2008 London</title><link href="https://chem-bla-ics.linkedchemistry.info/2008/08/29/leaving-to-science-blogging-2008-london.html" rel="alternate" type="text/html" title="Leaving to Science Blogging 2008 London" /><published>2008-08-29T00:00:00+00:00</published><updated>2008-08-29T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2008/08/29/leaving-to-science-blogging-2008-london</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2008/08/29/leaving-to-science-blogging-2008-london.html"><![CDATA[<p>Have to leave to the airport any second now for the <a href="https://web.archive.org/web/20080508230626/http://network.nature.com/group/sciblog2008">Science Blogging 2008 <i class="fa-solid fa-box-archive fa-xs"></i></a>
in London, so nothing much I shall say. Hope to see you tomorrow at the Royal Institute!</p>

<p>Update: <a href="https://web.archive.org/web/20080901224608/http://friendfeed.com/rooms/science-blogging-2008">live coverage <i class="fa-solid fa-box-archive fa-xs"></i></a>
at <a href="https://web.archive.org/web/20080902020422/http://friendfeed.com/">Friend Feed <i class="fa-solid fa-box-archive fa-xs"></i></a>.</p>]]></content><author><name>Egon Willighagen</name></author><category term="blog" /><category term="science" /><summary type="html"><![CDATA[Have to leave to the airport any second now for the Science Blogging 2008 in London, so nothing much I shall say. Hope to see you tomorrow at the Royal Institute!]]></summary></entry></feed>