<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="https://chem-bla-ics.linkedchemistry.info/feed/by_tag/rest.xml" rel="self" type="application/atom+xml" /><link href="https://chem-bla-ics.linkedchemistry.info/" rel="alternate" type="text/html" /><updated>2026-06-15T12:00:19+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/feed/by_tag/rest.xml</id><title type="html">chem-bla-ics</title><subtitle>Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.</subtitle><author><name>Egon Willighagen</name></author><entry><title type="html">Programming in the Life Sciences #2: accounts and API keys</title><link href="https://chem-bla-ics.linkedchemistry.info/2013/10/08/programming-in-life-sciences-2-accounts.html" rel="alternate" type="text/html" title="Programming in the Life Sciences #2: accounts and API keys" /><published>2013-10-08T00:00:00+00:00</published><updated>2013-10-08T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2013/10/08/programming-in-life-sciences-2-accounts</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2013/10/08/programming-in-life-sciences-2-accounts.html"><![CDATA[<p>I have outlined the scope of the <a href="http://chem-bla-ics.blogspot.nl/2013/10/programming-in-life-sciences-1-six-day.html">six-day course</a>:
the students will learn to program while hacking on the <a href="https://dev.openphacts.org/docs">Open PHACTS’ Linked Data API</a> (LDA). The first
step is to get an account for the LDA. I have already done that to save time. But these are the steps to take. You go to
<a href="https://dev.openphacts.org/signup">https://dev.openphacts.org/signup</a>:</p>

<p><img src="/assets/images/gscholar1.png" alt="" /></p>

<p>You then approve the account via your email account and you are set. The account is needed to get an API key. Using this key,
Open PHACTS developers can contact you if your scripts go berserk  So, you are kindly invited to make crazy hypotheses and hack the
hell out of the platform. That’s what I hope my students will do.</p>

<p>To try your new key, go to the documentation page, and open, for example, the <em>SMILES to URL</em> method:</p>

<p><img src="/assets/images/mscpils.png" alt="" /></p>

<p>Here you can see what parameters this LDA method has. We focus now on the <code class="language-plaintext highlighter-rouge">app_id</code> and <code class="language-plaintext highlighter-rouge">app_key</code> fields. Each account comes by default
with a, um, default <code class="language-plaintext highlighter-rouge">app_id</code> and default <code class="language-plaintext highlighter-rouge">app_key</code>. Just click on the field and select them:</p>

<p><img src="/assets/images/mscpils1.png" alt="" /></p>

<p>Select the defaults and enter a SMILES (try: <a href="https://apps.ideaconsult.net:8080/ambit2/depict?search=CC(=O)NC1=CC=C(C=C1)O">CC(=O)NC1=CC=C(C=C1)O)</a>).
You can select the format you like (I like Turtle) and you get Linked Data back on this <a href="https://rdf.chemspider.com/1906">compound</a>.</p>

<p>Now, go explore the LDA methods.</p>]]></content><author><name>Egon Willighagen</name></author><category term="pra3006" /><category term="openphacts" /><category term="javascript" /><category term="rest" /><summary type="html"><![CDATA[I have outlined the scope of the six-day course: the students will learn to program while hacking on the Open PHACTS’ Linked Data API (LDA). The first step is to get an account for the LDA. I have already done that to save time. But these are the steps to take. You go to https://dev.openphacts.org/signup:]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/gscholar1.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/gscholar1.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry></feed>