The system is beta, but I am happy about it already that I mention it now. For example, some article titles are not properly recognized, and some journals are known in the statistics in several formats. And, more importantly, I have not yet hooked in the InChI support I developed earlier.

So, if you like the idea, or know other interesting scientifically interesting chemistry blogs, leave a comment, or send me email.

Other applications involve complex documents, which is basically most existing documents. Take, for example, the PDB format from the PDB database. These PDB files contain a pletory of information including one or more protein structures, sequences and bibliographic information. Bioclipse supports each of those using the CDK, BioJava and JabRef libraries.

By making extension for the ChildResourceCreator EP, I am able to setup a general PDBResource (with Bioclipse’s syntax highlighted PDB editor), and child resources for the different bits of information. Bioclipse 1.0, however, only allow looking at the molecular structure(s) in the file, not at the sequence, nor the references. Will post the obligatory screenshot asap.

Next in line was Planet , which turned out to be used by many big planet sites, like Planet Debian . It also works with Atom feeds in general, but not well with Atom 1.0 feeds, like that of Carsten. After some googling I found a patched version which did the job.

The result is at http://www.woc.science.ru.nl/planetbo/ , but I hope that someone can arrange a http://planet.blueobelisk.org/.