<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="https://chem-bla-ics.linkedchemistry.info/feed/by_tag/enanomapper.xml" rel="self" type="application/atom+xml" /><link href="https://chem-bla-ics.linkedchemistry.info/" rel="alternate" type="text/html" /><updated>2026-07-18T13:36:15+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/feed/by_tag/enanomapper.xml</id><title type="html">chem-bla-ics</title><subtitle>Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.</subtitle><author><name>Egon Willighagen</name></author><entry><title type="html">The eNanoMapper project deliverables</title><link href="https://chem-bla-ics.linkedchemistry.info/2025/08/24/the-enanomapper-project-deliverables.html" rel="alternate" type="text/html" title="The eNanoMapper project deliverables" /><published>2025-08-24T00:00:00+00:00</published><updated>2025-08-24T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2025/08/24/the-enanomapper-project-deliverables</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2025/08/24/the-enanomapper-project-deliverables.html"><![CDATA[<p>This is a bit of an administrative post and historic, but keep coming back to the question, where are all the deliverable
of the (past) project. Now, since many <a href="https://chem-bla-ics.linkedchemistry.info/tag/enanomapper">eNanoMapper</a> project
deliverables were public, we were able to release most of them on Zenodo. This post makes an overview.</p>

<p>To former partners and collaborators, thanks for this awesome journey!</p>

<h2 id="work-package-1">Work Package 1</h2>

<p>WP1 was about community interaction and developeing solutions to support the <a href="https://www.nanosafetycluster.eu/">NanoSafety Cluster</a>.</p>

<ul>
  <li>D1.1 <strong>Requirements Analysis and System Design</strong> (<a href="https://zenodo.org/record/375623">10.5281/zenodo.375623</a>) (CC-BY 4.0 Int)</li>
  <li>D1.2 <strong>Use Cases and Test Suite</strong> (<a href="https://zenodo.org/record/375624">10.5281/zenodo.375624</a>) (CC-BY 4.0 Int)</li>
  <li>D1.3 <strong>Sustainability Plan</strong> (not public)</li>
  <li>D1.4 <strong>User Guidance</strong> (<a href="https://zenodo.org/record/375630">10.5281/zenodo.375630</a>) (CC-BY 4.0 Int)</li>
  <li>D1.5 <strong>Evaluation</strong> (not public)</li>
</ul>

<h2 id="work-package-2">Work Package 2</h2>

<p>But the grant call already described one specific need, a common language, so WP2 was all about the eNanoMapper Ontology (doi:<a href="https://doi.org/10.1186/S13326-015-0005-5">10.1186/S13326-015-0005-5</a>).</p>

<ul>
  <li>D2.1 <strong>Framework and Infrastructure for Ontology development, versioning and dissemination</strong> (<a href="https://zenodo.org/record/375633">10.5281/zenodo.375633</a>) (CC-BY 4.0 Int)</li>
  <li>D2.2 <strong>Ontology Content Types and Existing Community efforts</strong> (<a href="https://zenodo.org/record/375634">10.5281/zenodo.375634</a>) (CC-BY 4.0 Int)</li>
  <li>D2.3 <strong>Ontology initial release</strong> (<a href="https://zenodo.org/record/375635">10.5281/zenodo.375635</a>) (CC-BY 4.0 Int)</li>
  <li>D2.4 <strong>Ontology final release</strong> (<a href="https://zenodo.org/record/375636">10.5281/zenodo.375636</a>) (CC-BY 4.0 Int)</li>
</ul>

<h2 id="work-package-3">Work Package 3</h2>

<p>And the common language had as goal to support data and knowledge exchange, so WP3 was about the eNanoMapper Database (doi:<a href="https://doi.org/10.3762/bjnano.6.165">10.3762/bjnano.6.165</a>).</p>

<ul>
  <li>D3.1 <strong>Technical Specification and initial implementation of the protocol and data management web services</strong> (<a href="https://zenodo.org/record/375637">10.5281/zenodo.375637</a>) (CC-BY 4.0 Int)</li>
  <li>D3.2 <strong>Data Management System with extended search capabilities</strong> (<a href="https://zenodo.org/record/375639">10.5281/zenodo.375639</a>) (CC-BY 4.0 Int)</li>
  <li>D3.3 <strong>Modules and services for linking and integration with third party databases</strong> (<a href="https://zenodo.org/record/375813">10.5281/zenodo.375813</a>) (CC-BY 4.0 Int)</li>
  <li>D3.4 <strong>ISA-Tab templates for common bioselected set of assays</strong> (<a href="https://zenodo.org/record/375814">10.5281/zenodo.375814</a>) (CC-BY 4.0 Int)</li>
</ul>

<h2 id="work-package-4">Work Package 4</h2>

<p>WP4 and WP5 were aimed at impact, where WP4 focused on safe-by-design or AI for materials.</p>

<ul>
  <li>D4.1 <strong>Analysis and Modelling Specifications</strong> (<a href="https://zenodo.org/record/346000">10.5281/zenodo.346000</a>) (CC-BY 4.0 Int)</li>
  <li>D4.2 <strong>Descriptor Calculation Algorithms and Methods</strong> (<a href="https://zenodo.org/record/375609">10.5281/zenodo.375609</a>) (CC-BY 4.0 Int)</li>
  <li>D4.3 <strong>nQSAR Modelling infrastructure</strong> (<a href="https://zenodo.org/record/375610">10.5281/zenodo.375610</a>) (CC-BY 4.0 Int)</li>
  <li>D4.4 <strong>Mechanism-ofaction Modelling Tools</strong> (<a href="https://zenodo.org/record/375613">10.5281/zenodo.375613</a>) (CC-BY 4.0 Int)</li>
  <li>D4.5 <strong>Design of experiments and inter-laboratory testing facilities</strong> (<a href="https://zenodo.org/record/375616">10.5281/zenodo.375616</a>) (CC-BY 4.0 Int)</li>
  <li>D4.6 <strong>Tools for generating QMRF and QPRF reports</strong> (<a href="https://zenodo.org/record/375619">10.5281/zenodo.375619</a>) (CC-BY 4.0 Int)</li>
</ul>

<h2 id="work-package-5">Work Package 5</h2>

<p>This was perhaps a separate unique innovation: WP5 was not clearly defined in the outcome. We were going to ask
the community, and use results from WP2, WP3, and WP4 to help other NanoSafety Cluster projects. For example, the collaboration
with NanoReg was positioned in this WP.</p>

<ul>
  <li>D5.1 <strong>Integrated Issue Management and Testing system</strong> (not public)</li>
  <li>D5.2 <strong>User registration, authentication and authorisation</strong> (not public)</li>
  <li>D5.3 <strong>User applications for importing NanoWiki data</strong> (<a href="https://zenodo.org/record/345979">10.5281/zenodo.345979</a>) (CC-BY 4.0 Int)</li>
  <li>D5.4 <strong>User application for importing NanoSafety Cluster data</strong> (<a href="https://zenodo.org/record/345994">10.5281/zenodo.345994</a>) (CC-BY 4.0 Int)</li>
  <li>D5.5 <strong>User application for searching and downloading eNanoMapper data</strong> (<a href="https://zenodo.org/record/345995">10.5281/zenodo.345995</a>) (CC-BY 4.0 Int)</li>
  <li>D5.6 <strong>User Application for Conformance to Reporting and Curation Standards</strong> (<a href="https://zenodo.org/record/345997">10.5281/zenodo.345997</a>) (CC-BY 4.0 Int)</li>
  <li>D5.7 <strong>Final report on User Applications</strong> (<a href="https://zenodo.org/record/322296">10.5281/zenodo.322296</a>) (CC-BY 4.0 Int)</li>
</ul>

<h2 id="work-package-6">Work Package 6</h2>

<p>This was the management++ work package.</p>

<ul>
  <li>D6.1 <strong>eNanoMapper Year 1 Dissemination Report</strong> (<a href="https://zenodo.org/record/345960">10.5281/zenodo.345960</a>) (CC-BY 4.0 Int)</li>
  <li>D6.2 <strong>eNanoMapper Year 2 Dissemination Report</strong> (<a href="https://zenodo.org/record/345974">10.5281/zenodo.345974</a>) (CC-BY 4.0 Int)</li>
  <li>D6.3 <strong>eNanoMapper Tutorials</strong> (<a href="https://zenodo.org/record/345975">10.5281/zenodo.345975</a>) (CC-BY 4.0 Int)</li>
  <li>D6.4 <strong>eNanoMapper Community Development Report</strong> (not public)</li>
  <li>D6.5 <strong>eNanoMapper Exploitation Report</strong> (not public)</li>
  <li>D6.6 <strong>eNanoMapper Final Dissemination Report</strong> (<a href="https://zenodo.org/record/345976">10.5281/zenodo.345976</a>) (CC-BY 4.0 Int)</li>
</ul>

<p>I will probably do this in the future for other projects I have been involved in, but will
then maybe focus on deliverables I have co-authored.</p>]]></content><author><name>Egon Willighagen</name></author><category term="enanomapper" /><category term="doi:10.3762/BJNANO.6.165" /><category term="doi:10.1186/S13326-015-0005-5" /><category term="doi:10.5281/ZENODO.375623" /><category term="doi:10.5281/ZENODO.375624" /><category term="doi:10.5281/ZENODO.375630" /><category term="doi:10.5281/ZENODO.375633" /><category term="doi:10.5281/ZENODO.375634" /><category term="doi:10.5281/ZENODO.375635" /><category term="doi:10.5281/ZENODO.375636" /><category term="doi:10.5281/ZENODO.375637" /><category term="doi:10.5281/ZENODO.375639" /><category term="doi:10.5281/ZENODO.375813" /><category term="justdoi:10.5281/ZENODO.375814" /><category term="justdoi:10.5281/ZENODO.346000" /><category term="doi:10.5281/ZENODO.375609" /><category term="justdoi:10.5281/ZENODO.375610" /><category term="doi:10.5281/ZENODO.375613" /><category term="justdoi:10.5281/ZENODO.375616" /><category term="justdoi:10.5281/ZENODO.375619" /><category term="doi:10.5281/ZENODO.345979" /><category term="doi:10.5281/ZENODO.345994" /><category term="doi:10.5281/ZENODO.345995" /><category term="doi:10.5281/ZENODO.345997" /><category term="doi:10.5281/ZENODO.322296" /><category term="justdoi:10.5281/ZENODO.345960" /><category term="doi:10.5281/ZENODO.345974" /><category term="doi:10.5281/ZENODO.345975" /><category term="doi:10.5281/ZENODO.345976" /><summary type="html"><![CDATA[This is a bit of an administrative post and historic, but keep coming back to the question, where are all the deliverable of the (past) project. Now, since many eNanoMapper project deliverables were public, we were able to release most of them on Zenodo. This post makes an overview.]]></summary></entry><entry><title type="html">INTOXICOM Workshop #4: Training Materials for Toxicology</title><link href="https://chem-bla-ics.linkedchemistry.info/2025/05/12/intoxicom-training-material-collection.html" rel="alternate" type="text/html" title="INTOXICOM Workshop #4: Training Materials for Toxicology" /><published>2025-05-12T00:00:00+00:00</published><updated>2025-05-12T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2025/05/12/intoxicom-training-material-collection</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2025/05/12/intoxicom-training-material-collection.html"><![CDATA[<p>INTOXICOM is an ELIXIR Toxicoloy Community (doi:<a href="https://doi.org/10.12688/f1000research.74502.2">10.12688/f1000research.74502.2</a>)
implementation study, organizing five workshops, each
one with a different topic. The first three workshops were in Utrecht
(doi:<a href="https://doi.org/10.37044/osf.io/un2rw">10.37044/osf.io/un2rw</a>), Basel, and Uppsala.
The <a href="https://www.aanmelder.nl/intoxicom-ws-2/wiki/1152037/wp-4-features-ws-4">fourth workshop</a>
has the theme <em>training material</em> and will be held in Birmingham (thanks
<a href="https://www.linkedin.com/in/iseult-lynch-b5856910/">Iseult</a>!). And one aspect of that is to make
existing training material from toxicology projects indexed and therefore more FAIR.</p>

<p>Last week we had a telcon, and I promised to make an overview of some open educational resources
that I have (co-)developed over the years. It started during the eNanoMapper project, where
our Project Technical Adviser was Dr. <a href="https://orcid.org/0000-0003-1461-0988">Cedric Notredame</a>.
He commented on us using Word documents for training materials, and that was for me a cue to
<a href="https://github.com/enanomapper/tutorials/commit/5ca03a94a3bd3b60dbb6e080f05cb9faca7eaf69">start using</a>
GitHub Pages instead. We later reused this for NanoCommons, and by then GitHub Pages had
become common and the foundation for other online material for toxicology projects.</p>

<p>Here follows an overview of tutorials I contributed to. Some are already registered
with TeSS, but I am sure I will learn a lot of new tricks, and particularly about the
learning paths.</p>

<p>Hope to see you there! Register <a href="https://www.aanmelder.nl/intoxicom-ws-2/wiki/1152037/wp-4-features-ws-4">here</a>.</p>

<h2 id="enanomapper">eNanoMapper</h2>

<ul>
  <li><a href="https://enanomapper.github.io/tutorials/BrowseOntology/Tutorial%20browsing%20eNM%20ontology.html">Browsing the eNanoMapper ontology with BioPortal, AberOWL and Protégé</a></li>
  <li><a href="https://enanomapper.github.io/tutorials/Entering_and_analysing_nano_safety_data/readme.html">Entering and analysing nano safety data</a></li>
  <li><a href="https://enanomapper.github.io/tutorials/Added%20ontology%20terms/README.html">Adding ontology terms</a></li>
  <li><a href="https://enanomapper.github.io/tutorials/Pathway_analysis/Pathway%20analysis.html">How to use the Pathway module of ArrayAnalysis.org for pathway analysis of microarray data</a></li>
  <li><a href="https://enanomapper.github.io/tutorials/Pathway/readme.html">How to make a pathway</a></li>
</ul>

<p>By other eNanoMapper partners:</p>

<ul>
  <li><a href="https://enanomapper.github.io/tutorials/Omics%20descriptors%20calculation/Omics%20descriptors%20calculation%20R%20package.html">Omics descriptors calculation</a> (by Georgia Tsiliki and Haralambos Sarimveis)</li>
</ul>

<h2 id="nanocommons">NanoCommons</h2>

<ul>
  <li><a href="https://nanocommons.github.io/tutorials/enteringData/">Adding nanomaterial data</a></li>
  <li><a href="https://nanocommons.github.io/user-handbook/FAIRification/ten-simple-actions/">Ten simple actions to make NSC Research Output more Findable</a></li>
</ul>

<p>By group members:</p>

<ul>
  <li><a href="https://nanocommons.github.io/tutorials/eNanoMapper/">Adding new term to the eNanoMapper ontology</a> (by Laurent Winckers)</li>
  <li><a href="https://nanocommons.github.io/user-handbook/">NanoCommons User Guidance Handbook</a> (by Thomas Exner, with contributions by many)</li>
</ul>

<h2 id="fairplus">FAIRplus</h2>

<p>I add this one as well, as this below recipes were developed for the eTox use case.</p>

<ul>
  <li><a href="https://w3id.org/faircookbook/FCB007">InChI and SMILES identifiers for chemical structures</a></li>
  <li><a href="https://w3id.org/faircookbook/FCB080">Creating InChIKeys for IUPAC names</a></li>
</ul>

<h2 id="vhp4safety">VHP4Safety</h2>

<ul>
  <li><a href="https://docs.vhp4safety.nl/en/latest/tutorials/cheminfo/intro.html">Information about chemicals</a></li>
</ul>

<p>Many more are listed on the <a href="https://docs.vhp4safety.nl/e">VHP4Safety Docs</a> website.</p>]]></content><author><name>Egon Willighagen</name></author><category term="enanomapper" /><category term="nanocommons" /><category term="elixir" /><category term="cito:citesAsRecommendedReading:10.12688/f1000research.74502.2" /><category term="cito:citesAsRecommendedReading:10.37044/osf.io/un2rw" /><summary type="html"><![CDATA[INTOXICOM is an ELIXIR Toxicoloy Community (doi:10.12688/f1000research.74502.2) implementation study, organizing five workshops, each one with a different topic. The first three workshops were in Utrecht (doi:10.37044/osf.io/un2rw), Basel, and Uppsala. The fourth workshop has the theme training material and will be held in Birmingham (thanks Iseult!). And one aspect of that is to make existing training material from toxicology projects indexed and therefore more FAIR.]]></summary></entry><entry><title type="html">New paper: “Integration among databases and data sets to support productive nanotechnology: Challenges and recommendations”</title><link href="https://chem-bla-ics.linkedchemistry.info/2017/12/15/new-paper-integration-among-databases.html" rel="alternate" type="text/html" title="New paper: “Integration among databases and data sets to support productive nanotechnology: Challenges and recommendations”" /><published>2017-12-15T00:00:00+00:00</published><updated>2017-12-15T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2017/12/15/new-paper-integration-among-databases</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2017/12/15/new-paper-integration-among-databases.html"><![CDATA[<p><img style="float: right;" src="/assets/images/1-s2.0-S2452074817301398-gr1.png" width="200" alt="Figure 1 from the NanoImpact article. CC-BY." />
The U.S.A and European nanosafety communities have a longstanding history of collaboration. On both sides there are working groups,
<a href="https://nciphub.org/groups/nanowg">NanoWG</a> and <a href="https://www.nanosafetycluster.eu/working-groups/wg-f-data-management.html">WG-F</a> (previously called
WG4) of the NanoSafety Cluster. I have been chair of WG4 for about three years and still active in the group, though in the past half year, without
dedicated funding, less active. That is already changing again with the imminent start of the
<a href="https://twitter.com/iseult5/status/836879814581698560">NanoCommons</a> project.</p>

<p>One of these collaborations resulted in a series of papers around data curation (see
doi:<a href="https://doi.org/10.1039/C5NR08944A">10.1039/C5NR08944A</a> and
doi:<a href="https://doi.org/10.3762/bjnano.6.189">10.3762/bjnano.6.189</a>). Part of this effort was also an survey about the state of databases. A good
number of databases responded to the call. It turned out non-trivial to analyse the results and write up a report around it with recommendations.
The first version was submitted and rejected, and with fresh leadership, the paper underwent a significant restructuring by
<a href="http://www.codata.org/events/codata-prize/2006-john-rumble-usa">John Rumble</a> and resubmitted to Elsevier’s
<a href="http://www.sciencedirect.com/science/journal/24520748">NanoImpact</a> and now online
(doi:<a href="http://dx.doi.org/10.1016/j.impact.2017.11.002">10.1016/j.impact.2017.11.002</a>).</p>

<p>The paper outlines an overview of challenges and a recommendation to the community on how to proceed. That is, basically, how should projects
like <a href="https://search.data.enanomapper.net/">eNanoMapper</a>, <a href="https://cananolab.nci.nih.gov/caNanoLab/">caNanoLab</a>, and
<a href="https://www.nanomaterialregistry.org/">Nanomaterial Registry</a> evolve to, and what might the
<a href="https://echa.europa.eu/-/eu-observatory-for-nanomaterials-launched">European Union Observatory for Nanomaterials</a> (EUON) look like. BTW, a
similar paper by Tropsha et al. was recently published the other week with a focus on the USA database ecosystem
(doi:<a href="https://doi.org/10.1038/nnano.2017.233">10.1038/nnano.2017.233</a>).</p>

<p>Have fun reading <a href="https://doi.org/10.1016/j.impact.2017.11.002">it</a>, and if you are working in a related field, please join
either of the two aforementioned working groups! And a huge thanks to everyone involved, particular Sandra, John, and Christine.</p>]]></content><author><name>Egon Willighagen</name></author><category term="nanosafety" /><category term="justdoi:10.1039/C5NR08944A" /><category term="justdoi:10.3762/bjnano.6.189" /><category term="doi:10.1016/J.IMPACT.2017.11.002" /><category term="justdoi:10.1038/nnano.2017.233" /><category term="enanomapper" /><category term="nanocommons" /><category term="eunsc" /><summary type="html"><![CDATA[The U.S.A and European nanosafety communities have a longstanding history of collaboration. On both sides there are working groups, NanoWG and WG-F (previously called WG4) of the NanoSafety Cluster. I have been chair of WG4 for about three years and still active in the group, though in the past half year, without dedicated funding, less active. That is already changing again with the imminent start of the NanoCommons project.]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/1-s2.0-S2452074817301398-gr1.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/1-s2.0-S2452074817301398-gr1.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry><entry><title type="html">The SWAT4LS poster about eNanoMapper</title><link href="https://chem-bla-ics.linkedchemistry.info/2016/12/18/my-swat4ls-poster-about-enanomapper.html" rel="alternate" type="text/html" title="The SWAT4LS poster about eNanoMapper" /><published>2016-12-18T00:00:00+00:00</published><updated>2016-12-18T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2016/12/18/my-swat4ls-poster-about-enanomapper</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2016/12/18/my-swat4ls-poster-about-enanomapper.html"><![CDATA[<p><a href="http://www.swat4ls.org/">SWAT4LS</a> was once again a great meeting. I doubt I will find time soon enough to
write up notes, but at least I can post the <a href="http://enanomapper.net/">eNanoMapper</a> poster I presented, which
is available from <a href="https://f1000research.com/">F1000Research</a>:</p>

<p><img src="/assets/images/enanomapper_poster.png" alt="" /></p>]]></content><author><name>Egon Willighagen</name></author><category term="swat4ls" /><category term="enanomapper" /><category term="sparql" /><category term="doi:10.7490/f1000RESEARCH.1113520.1" /><summary type="html"><![CDATA[SWAT4LS was once again a great meeting. I doubt I will find time soon enough to write up notes, but at least I can post the eNanoMapper poster I presented, which is available from F1000Research:]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/enanomapper_poster.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/enanomapper_poster.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry><entry><title type="html">Jean-Claude Bradley, Blue Obelisk award winner</title><link href="https://chem-bla-ics.linkedchemistry.info/2014/05/14/jean-claude-bradley-blue-obelisk-award.html" rel="alternate" type="text/html" title="Jean-Claude Bradley, Blue Obelisk award winner" /><published>2014-05-14T00:00:00+00:00</published><updated>2014-05-14T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2014/05/14/jean-claude-bradley-blue-obelisk-award</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2014/05/14/jean-claude-bradley-blue-obelisk-award.html"><![CDATA[<p><span style="width: 35%; display: block; margin-left: auto; margin-right: auto; float: right">
<img src="/assets/images/1752-153X-3-14-graphical-abstract.png" /> <br />
Chemistry in Second Life. DOI:<a href="https://doi.org/10.1186/1752-153X-3-14">10.1186/1752-153X-3-14</a>
</span>
There are nowadays a lot of people talking about Open, about open access, open data, open source. In fact, some discussion on Twitter resulted
in the realization that it is highly unlikely that any scholar has not taken advantage of Open in some way in their research in the last few
years. However, this is mostly due to people whom actually do, not by those who talk about it or use it.</p>

<p>One of the few people in chemistry who did both promoting Open and doing Open was <a href="http://usefulchem.blogspot.nl/">Jean-Claude Bradley</a>.
Yesterday, I heard the sad news that he passed away. This is a great loss to many of us and certainly to the open chemistry community.
Jean-Claude received the <a href="https://sourceforge.net/apps/mediawiki/blueobelisk/index.php?title=Blue_Obelisk_Awards">Blue Obelisk award</a> for
his <a href="https://en.wikipedia.org/wiki/Open_Notebook_Science">Open Notebook Science</a> work back in 2007 (I handed him the obelisk at the ACS
meeting in Chicago; thanx to <a href="http://www.steinbeck-molecular.de/steinblog/index.php/2014/05/14/in-memory-of-open-science-pioneer-jean-claude-bradley/">Chris</a>
for taking the picture, and digging it up!) and he contributed much to the community, among which his melting point and
<a href="http://chem-bla-ics.blogspot.nl/2008/11/solubility-data-in-bioclipse-1.html">solubility data</a> for organic compounds.</p>

<p><img src="/assets/images/JCBradley-Blue-Obelisk.jpg" alt="" /></p>
<center>A proud me handing out the Blue Obelisk award to Jean-Claude in Chicago in 2007.
CC-BY 2007 <a href="http://www.steinbeck-molecular.de/steinblog/index.php/2014/05/14/in-memory-of-open-science-pioneer-jean-claude-bradley/">Christoph Steinbeck</a>.</center>

<p>Jean-Claude and I did some work together, including a book chapter, which I liked being a trained organic chemist myself (well, just a
<a href="http://chem-bla-ics.blogspot.nl/2011/06/chiral-molecules-how-cool-is-sem.html">6 month minor</a> during my M.Sc. on supramolecular chemistry).
I was really pleased that he had accepted to become part of the <a href="http://enanomapper.net/">eNanoMapper</a> scientific advisory board, and
I was very much looking forward to working with him again on the journal side of dissemination of nanosafety research, in his role as
editor-in-chief of <a href="http://journal.chemistrycentral.com/">Chemistry Central Journal</a>.</p>

<p>Few people leave a big impression on me, but he was certainly one of them.
<a href="http://friendfeed.com/jcbradley">Let</a> <a href="http://www.slideshare.net/jcbradley">his</a> <a href="https://www.youtube.com/user/jeanclaudebradley/videos">extensive</a>
<a href="http://usefulchem.wikispaces.com/Jean-Claude+Bradley">work</a> <a href="https://twitter.com/jcbradley/">not</a>
<a href="http://journal.chemistrycentral.com/content/3/1/14">go</a> <a href="http://www.jcheminf.com/content/1/1/9/abstract">unnoticed</a>;
there is still a <a href="http://chem-bla-ics.blogspot.nl/2013/09/urgent-open-science-needs-for-drug.html">lot to do</a> in Open chemistry.</p>

<p><a href="http://www.chemconnector.com/2014/05/14/in-memory-of-jean-claude-bradley/">Other</a>
<a href="http://www.steinbeck-molecular.de/steinblog/index.php/2014/05/14/in-memory-of-open-science-pioneer-jean-claude-bradley/">posts</a>
<a href="http://drexel.edu/chemistry/news/archive/mourning-jean-claude-bradley-department-of-chemistry/">about</a>
<a href="http://cenblog.org/terra-sigillata/2014/05/14/mourning-open-notebook-science-pioneer-dr-jean-claude-bradley/">this</a> loss.</p>]]></content><author><name>Egon Willighagen</name></author><category term="blue-obelisk" /><category term="justdoi:10.1186/1752-153X-3-14" /><category term="enanomapper" /><category term="obituary" /><category term="justdoi:10.1186/1758-2946-1-9" /><summary type="html"><![CDATA[Chemistry in Second Life. DOI:10.1186/1752-153X-3-14 There are nowadays a lot of people talking about Open, about open access, open data, open source. In fact, some discussion on Twitter resulted in the realization that it is highly unlikely that any scholar has not taken advantage of Open in some way in their research in the last few years. However, this is mostly due to people whom actually do, not by those who talk about it or use it.]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/1752-153X-3-14-graphical-abstract.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/1752-153X-3-14-graphical-abstract.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry><entry><title type="html">Looking for a PhD and a Postdoc to work on Open Science Nanosafety</title><link href="https://chem-bla-ics.linkedchemistry.info/2013/11/08/looking-for-phd-and-postdoc-to-work-on.html" rel="alternate" type="text/html" title="Looking for a PhD and a Postdoc to work on Open Science Nanosafety" /><published>2013-11-08T00:00:00+00:00</published><updated>2013-11-08T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2013/11/08/looking-for-phd-and-postdoc-to-work-on</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2013/11/08/looking-for-phd-and-postdoc-to-work-on.html"><![CDATA[<p>I am happy that I got my first research grant awarded (EU FP7), which should start after all the contracts are signed,
etc, somewhere early 2014. The project is about setting up data needs for the analysis of nanosafety studies. And for this,
I have the below two position vacancies available now. If you are keen on doing Open Science (CDK, Bioclipse, OpenTox, WikiPathways, …, …),
working within the European <a href="http://www.nanosafetycluster.eu/">NanoSafety Cluster</a>, and have an affinity with understanding the
systems biology of nanomaterials, then you may be interested in applying.</p>

<p><strong>PhD position</strong></p>

<p><img src="/assets/images/vac1.png" alt="" /></p>

<p><strong>Postdoc position</strong></p>

<p><img src="/assets/images/vac2.png" alt="" /></p>]]></content><author><name>Egon Willighagen</name></author><category term="nanosafety" /><category term="enanomapper" /><category term="opentox" /><category term="ontology" /><summary type="html"><![CDATA[I am happy that I got my first research grant awarded (EU FP7), which should start after all the contracts are signed, etc, somewhere early 2014. The project is about setting up data needs for the analysis of nanosafety studies. And for this, I have the below two position vacancies available now. If you are keen on doing Open Science (CDK, Bioclipse, OpenTox, WikiPathways, …, …), working within the European NanoSafety Cluster, and have an affinity with understanding the systems biology of nanomaterials, then you may be interested in applying.]]></summary><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://chem-bla-ics.linkedchemistry.info/assets/images/vac1.png" /><media:content medium="image" url="https://chem-bla-ics.linkedchemistry.info/assets/images/vac1.png" xmlns:media="http://search.yahoo.com/mrss/" /></entry></feed>