<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="https://chem-bla-ics.linkedchemistry.info/feed/by_tag/biology.xml" rel="self" type="application/atom+xml" /><link href="https://chem-bla-ics.linkedchemistry.info/" rel="alternate" type="text/html" /><updated>2026-06-15T12:00:19+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/feed/by_tag/biology.xml</id><title type="html">chem-bla-ics</title><subtitle>Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.</subtitle><author><name>Egon Willighagen</name></author><entry><title type="html">BioJava 1.5 beta released</title><link href="https://chem-bla-ics.linkedchemistry.info/2006/09/08/biojava-15-beta-released.html" rel="alternate" type="text/html" title="BioJava 1.5 beta released" /><published>2006-09-08T00:00:00+00:00</published><updated>2006-09-08T00:00:00+00:00</updated><id>https://chem-bla-ics.linkedchemistry.info/2006/09/08/biojava-15-beta-released</id><content type="html" xml:base="https://chem-bla-ics.linkedchemistry.info/2006/09/08/biojava-15-beta-released.html"><![CDATA[<p><a href="http://www.bioservices.net/2006/09/biojava-15-beta-released.html">Martin Szugat reported</a> that a beta for <a href="http://biojava.org/wiki/BioJava:Download">BioJava 1.5</a>
has been released. New features include: a new <a href="http://www.biojava.org/docs/api15b/index.html">biojavax</a> package with extension on the basic functionlity, such as
the <code class="language-plaintext highlighter-rouge">RichSequence.IOTools</code> and the <code class="language-plaintext highlighter-rouge">RichSequence</code> object; a <a href="http://biojava.org/wiki/BioJava:BioJavaXDocs#Genetic_Algorithms">genetic algorithm library</a>; features
that allow manipulation of 3D structure files and objects; and non-HMM implementations of the NW and SW alignment algorithms. The announcement also mentions a new
package for handling external processes (org.biojava.utils.process); I am wondering what that is about. I will upload this beta to Bioclipse
<a href="http://svn.sourceforge.net/viewvc/bioclipse/trunk/bc_biojava/">trunk/bc_biojava/</a> shortly, so that we can play with it.</p>]]></content><author><name>Egon Willighagen</name></author><category term="biology" /><category term="java" /><category term="biojava" /><summary type="html"><![CDATA[Martin Szugat reported that a beta for BioJava 1.5 has been released. New features include: a new biojavax package with extension on the basic functionlity, such as the RichSequence.IOTools and the RichSequence object; a genetic algorithm library; features that allow manipulation of 3D structure files and objects; and non-HMM implementations of the NW and SW alignment algorithms. The announcement also mentions a new package for handling external processes (org.biojava.utils.process); I am wondering what that is about. I will upload this beta to Bioclipse trunk/bc_biojava/ shortly, so that we can play with it.]]></summary></entry></feed>