Jekyll2026-06-15T12:00:19+00:00https://chem-bla-ics.linkedchemistry.info/feed/by_tag/biojava.xmlchem-bla-icsChemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.Egon WillighagenComplex PDB documents using the Bioclipse ChildResourceCreator2006-09-14T00:00:00+00:002006-09-14T00:00:00+00:00https://chem-bla-ics.linkedchemistry.info/2006/09/14/complex-pdb-documents-using-bioclipseSome time ago I blogged about the ChildResourceCreator extension point in Bioclipse
and hinted as using that for PDB files. which contain 3D molecular models, sequences and bibliographic information. Using the new extension point,
Bioclipse now treats PDB files as complex documents, creating child resources for the 3D molecular model (using the
CDK plugin), and a sequence resource (using the BioJava plugin).
]]>Egon WillighagenBioJava 1.5 beta released2006-09-08T00:00:00+00:002006-09-08T00:00:00+00:00https://chem-bla-ics.linkedchemistry.info/2006/09/08/biojava-15-beta-releasedMartin Szugat reported that a beta for BioJava 1.5
has been released. New features include: a new biojavax package with extension on the basic functionlity, such as
the RichSequence.IOTools and the RichSequence object; a genetic algorithm library; features
that allow manipulation of 3D structure files and objects; and non-HMM implementations of the NW and SW alignment algorithms. The announcement also mentions a new
package for handling external processes (org.biojava.utils.process); I am wondering what that is about. I will upload this beta to Bioclipse
trunk/bc_biojava/ shortly, so that we can play with it.]]>Egon Willighagen
