{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2023/05/22/paper-fair-cookbook-essential-resource.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/16tan-06d32",
      "url": "https://chem-bla-ics.linkedchemistry.info/2023/05/22/paper-fair-cookbook-essential-resource.html",
      "title": "Paper: The FAIR Cookbook - the essential resource for and by FAIR doers",
      "content_html": "<p>I think that if you want to make your knowledge FAIR, you should use an open license and RDF. Simple. Now, not everything is knowledge.\nA lot of data is, but a lot more is not, think raw data. Using RDF to explain a protein sequence is still something that makes me feel uneasy.</p>\n\n<p>However, first, you need to make RDF, you need to make assumptions explicit, you need to decide on meaning. Making RDF is not easy.\nIt’s not hard, just a lot of administration and scientific thinking. What did I measure? What model do I use to describe the chemistry?\nYou know, my research job.</p>\n\n<p>Moreover, not only data should be FAIR. All research output (worth communicating) should be FAIR.</p>\n\n<p>In the past, Andra Waagmeester invited me to co-author a recipe that explains the\n<a href=\"http://www.openphacts.org/specs/2013/WD-rdfguide-20131007/\">general steps of creating RDF</a>. This was during the Open PHACTS project and with Carina Haupt.\nWriting recipes is something getting traction. They are a bit like <a href=\"https://r-pkgs.org/vignettes.html\">vignettes from the R world</a>.</p>\n\n<p>In the past few years the <a href=\"https://cordis.europa.eu/project/id/802750\">FAIRplus project</a> created a\n<a href=\"https://faircookbook.elixir-europe.org/\">FAIR Cookbook</a> with recipes and I wrote a few. Actually, I still have a few to finish,\nfor which I cannot find the time. I retrospect, I spent too much time on perfecting the recipe to finish them earlier. The FAIR Cookbook\nis now a professional venue with editorial board. It is fully open source and welcomes your recipes. Oh, and it is now hosted as ELIXIR service,\nwhich is great to see!</p>\n\n<p>Finally, the <a href=\"https://doi.org/10.1038/s41597-023-02166-3\">The FAIR Cookbook - the essential resource for and by FAIR doers paper</a>\nis out. Go read it :)</p>\n\n<p><img src=\"https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs41597-023-02166-3/MediaObjects/41597_2023_2166_Fig2_HTML.png?as=webp\" alt=\"Screenshot of a FAIR Cookbook recipe showing the infobox at the top (with reading time, difficulty indicator (4/5 flames), the audience (PIs, ontologists, data scholars), and the author list with ORCID, affiliation, and CReDIT annotation.)\" /></p>\n<center>\nFigure 2 from the article: 'Citability of recipes and identification of and credit for authors; an example is provided.'\n</center>\n\n<h4>References</h4>\n<div class=\"csl-bib-body\">\n    <div class=\"csl-entry\">Rocca-Serra, P., Gu, W., Ioannidis, V., Abbassi-Daloii, T., Capella-Gutierrez, S., Chandramouliswaran, I., Splendiani, A., Burdett, T., Giessmann, R. T., Henderson, D., Batista, D., Emam, I., Gadiya, Y., Giovanni, L., Willighagen, E., Evelo, C., Gray, A. J. G., Gribbon, P., Juty, N., … Sansone, S.-A. (2023). The FAIR Cookbook - the essential resource for and by FAIR doers. <i>Scientific Data</i>, <i>10</i>(1). https://doi.org/10.1038/s41597-023-02166-3 <a href=\"https://doi.org/10.1038/s41597-023-02166-3\">CrossRef</a> <a href=\"https://qlever.scholia.wiki/doi/10.1038/s41597-023-02166-3\">Scholia</a></div>\n  </div>",
      "summary": "I think that if you want to make your knowledge FAIR, you should use an open license and RDF. Simple. Now, not everything is knowledge. A lot of data is, but a lot more is not, think raw data. Using RDF to explain a protein sequence is still something that makes me feel uneasy.",
      "image": "https://chem-bla-ics.linkedchemistry.infohttps://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs41597-023-02166-3/MediaObjects/41597_2023_2166_Fig2_HTML.png?as=webp",
      "date_published": "2023-05-22T00:00:00+00:00",
      "date_modified": "2025-02-16T00:00:00+00:00",
      "tags": ["fair"],
      "_references": [
        
          
          
            { "url": "https://doi.org/10.1038/s41597-023-02166-3", "doi": "10.1038/s41597-023-02166-3"
             }
            
          
        ],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}