{ "version": "https://jsonfeed.org/version/1.1", "title": "chem-bla-ics", "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.", "home_page_url": "https://chem-bla-ics.linkedchemistry.info/", "feed_url": "https://chem-bla-ics.linkedchemistry.info/2022/04/17/bridgedb-nwo-grant-update-2-building-up.json", "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png", "language": "en", "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286", "_orcid": "0000-0001-7542-0286" } ], "items": [ { "id": "https://doi.org/10.59350/t5wrt-55f66", "url": "https://chem-bla-ics.linkedchemistry.info/2022/04/17/bridgedb-nwo-grant-update-2-building-up.html", "title": "BridgeDb NWO grant update #2: building up momentum", "content_html": "

\"UML\nLast month I reported on the start of the\nNWO Open Science grant and it is time for an update. First,\nour grant now has a grant number, 203.001.121. For a project that is about identifiers,\nhaving a project identifier is a big deal.

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Some updates by Denise, Martina, Tooba, Helena, and me:

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There are some further things cooking, including an updated datasources.tsv and a few\npull requests. I expect a new release of the BridgeDb Java library before the end of the month.

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With these new results, we also updated the ISAAC database for the two new products\n(the published proposal and the gene/protein ID mapping database):

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Right now, the ISAAC database does not make it easy to add content. Instead, there is a series of forms that have to be\nmanually filled, including separate forms for authors. You cannot simply add a DOI. Well, until recent.\nLars Willighagen and I developed a Chrome browser add-on\nto help out (also works with Brave), using his awesome citation-js\n(doi:10.7717/peerj-cs.214). The above two entries in the database have\nbeen added using this add-on.

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We hope it will help other NWO grant holders too and that the add-on becomes obsolete in the near future Because the ISAAC database needs some updates elsewhere too. For example, it does not seem to value open source and open data so much yet:

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That is a shame.

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References

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Abbassi-Daloii, T., De Meyer, L., & Kutmon, M. (2022). Gene/Protein BridgeDb ID Mapping Database (Ensembl 104) (Version 104) [Dataset]. Zenodo. https://doi.org/10.5281/ZENODO.6367091 CrossRef Scholia
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Willighagen, E., Kutmon, M., Martens, M., & Slenter, D. (2022). BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb). Research Ideas and Outcomes, 8. https://doi.org/10.3897/rio.8.e83031 CrossRef Scholia
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Willighagen, L. G. (2019). Citation.js: a format-independent, modular bibliography tool for the browser and command line. PeerJ Computer Science, 5, e214. https://doi.org/10.7717/peerj-cs.214 CrossRef Scholia
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", "summary": "Last month I reported on the start of the NWO Open Science grant and it is time for an update. First, our grant now has a grant number, 203.001.121. For a project that is about identifiers, having a project identifier is a big deal.", "image": "https://chem-bla-ics.linkedchemistry.info/assets/images/bridgedb_nwo_isaac.png", "date_published": "2022-04-17T00:00:00+00:00", "date_modified": "2025-03-14T00:00:00+00:00", "tags": ["bridgedb","openscience","isaac"], "_references": [ { "url": "https://doi.org/10.3897/RIO.8.E83031", "doi": "10.3897/RIO.8.E83031" } , { "url": "https://doi.org/10.5281/ZENODO.6367091", "doi": "10.5281/ZENODO.6367091" } , { "url": "https://doi.org/10.7717/peerj-cs.214", "doi": "10.7717/peerj-cs.214" } ], "_funding": [{"award": { "title" : "BridgeDb and Wikidata: a powerful combination generating interoperable open research", "uri" : "drc.filenumber:203001121" }, "funder": { "name": "Dutch Research Council", "ror": "04jsz6e67" } }], "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ] } ] }