{ "version": "https://jsonfeed.org/version/1.1", "title": "chem-bla-ics", "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.", "home_page_url": "https://chem-bla-ics.linkedchemistry.info/", "feed_url": "https://chem-bla-ics.linkedchemistry.info/2020/11/01/cito-updates-2-annotation-migration-to.json", "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png", "language": "en", "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286", "_orcid": "0000-0001-7542-0286" } ], "items": [ { "id": "https://doi.org/10.59350/6v7gp-pfd21", "url": "https://chem-bla-ics.linkedchemistry.info/2020/11/01/cito-updates-2-annotation-migration-to.html", "title": "CiTO updates #2: annotation migration to Wikidata and first Scholia patch", "content_html": "

During the time of the editorial about the Journal of Cheminformatics\nCitation Typing Ontology (CiTO) Pilot\nI already worked out a model to add CiTO annotation in Wikidata. It looks like this for\nthe first research article with annotation :

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At the time I also write some SPARQL queries against Wikidata to\nsummaries the current use. There are, for example, at this moment 128 CiTO annotations in Wikidata\n(with the above model). At this moment the citation intention “uses method in cited work” is currently the most common.\nAnd 20 journals now have one or more articles with CiTO annotation, with the Journal of Cheminformatics the most\n(no surprise).

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Scholia

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Next up is to enrich Scholia. This may be a bit tricky at this moment, with the annotation not\nbeing very abundant at this moment. However, I have started a patch (WIP, work in progress) to show CiTO information.\nThe first step is an extension to the venue aspect, here in action (locally) for the Journal of Cheminformatics:

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What we learn from this bubble graph is that at this moment that ‘updates the cited work’ is the most common annotation of\narticles citing J.Cheminform. articles. Similar pages will have to be developed for works, authors, etc.

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This Scholia work, btw, was funded by a Alfred P. Sloan under grant number G-2019-11458.

", "summary": "During the time of the editorial about the Journal of Cheminformatics Citation Typing Ontology (CiTO) Pilot I already worked out a model to add CiTO annotation in Wikidata. It looks like this for the first research article with annotation :", "image": "https://chem-bla-ics.linkedchemistry.info/assets/images/cito_in_wikidata.png", "date_published": "2020-11-01T00:10:00+00:00", "date_modified": "2025-12-29T00:00:00+00:00", "tags": ["cito","wikidata","scholia"], "_funding": [{"award": { "title" : "To support development on Scholia, a software tool to facilitate the exploration and curation of the research literature", "acronym" : "Scholia", "uri" : "https://sloan.org/grant-detail/G-2019-11458" }, "funder": { "name": "Alfred P. Sloan Foundation", "ror": "052csg198" } }], "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ] } ] }