{ "version": "https://jsonfeed.org/version/1.1", "title": "chem-bla-ics", "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.", "home_page_url": "https://chem-bla-ics.linkedchemistry.info/", "feed_url": "https://chem-bla-ics.linkedchemistry.info/2020/05/07/new-project-covid-19-disease-maps.json", "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png", "language": "en", "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286", "_orcid": "0000-0001-7542-0286" } ], "items": [ { "id": "https://doi.org/10.59350/q9h5d-h9j15", "url": "https://chem-bla-ics.linkedchemistry.info/2020/05/07/new-project-covid-19-disease-maps.html", "title": "new project: "COVID-19 Disease Maps"", "content_html": "

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\nProject logo by Marek Ostaszewski. CC-BY.\n\nAlready started a few weeks ago, but the COVID-19 Disease Maps project now has a sketch published, outlining the ambitions:\nCOVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms\n(doi:10.1038/s41597-020-0477-8).

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I’ve been focusing on the experimental knowledge we have about the components of the SARS-CoV-2 virion and how they\ninteract with the human cell. I’m at least two weeks behind on reading literature, but hope to catch up a bit this\nweek. The following diagram shows one of the pathways on the WikiPathways COVID-19 Portal:

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wikipathways:WP4846, CC0
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This has led to collaborations with Andra Waagmeester, Jasper Koehorst and others, resulting in this\npreprint that needs some tweaking before submission,\nto an awesome collaboration with Birgit Meldal around the Complex Portal\n(preprint pending), and a Japanese translation of a\nbook around a number search queries against Wikidata (CC-BY/CC0).\nThe latter two were started at the recent online BioHackathon.

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Oh, boy, do I love Open Science.

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References

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Ostaszewski, M., Mazein, A., Gillespie, M. E., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A. R., Willighagen, E. L., Evelo, C. T., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L. I., Barillot, E., Dopazo, J., Orta-Resendiz, A., Messina, F., … Schneider, R. (2020). COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data, 7(1). https://doi.org/10.1038/s41597-020-0477-8 CrossRef Scholia
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Waagmeester, A., Willighagen, E. L., Su, A. I., Kutmon, M., Labra Gayo, J. E., Fernández-Álvarez, D., Groom, Q., Schaap, P. J., Verhagen, L. M., & Koehorst, J. J. (2020). A protocol for adding knowledge to Wikidata, a case report. In bioRxiv. openRxiv. https://doi.org/10.1101/2020.04.05.026336 CrossRef Scholia
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", "summary": "Project logo by Marek Ostaszewski. CC-BY. Already started a few weeks ago, but the COVID-19 Disease Maps project now has a sketch published, outlining the ambitions: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (doi:10.1038/s41597-020-0477-8).", "image": "https://chem-bla-ics.linkedchemistry.info/assets/images/WP4846_110308.png", "date_published": "2020-05-07T00:00:00+00:00", "date_modified": "2020-05-07T00:00:00+00:00", "tags": ["covid19","wikipathways","wikidata","sparql","complexportal"], "_references": [ { "url": "https://doi.org/10.1038/S41597-020-0477-8", "doi": "10.1038/S41597-020-0477-8" } , { "url": "https://doi.org/10.1101/2020.04.05.026336", "doi": "10.1101/2020.04.05.026336" } ], "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ] } ] }