{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2009/11/04/bioclipse-manager-for-myexperimentorg.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/c7qy9-qdj95",
      "url": "https://chem-bla-ics.linkedchemistry.info/2009/11/04/bioclipse-manager-for-myexperimentorg.html",
      "title": "Bioclipse Manager for MyExperiment.org",
      "content_html": "<p>Some time ago I wrote about using <a href=\"https://chem-bla-ics.linkedchemistry.info/2009/08/21/bioclipse-and-sparql-end-points-2.html\">Bioclipse to query to MyExperiment.org SPARQL end point <i class=\"fa-solid fa-recycle fa-xs\"></i></a>.\nI think I had not mentioned that I have also written a manager to download <a href=\"http://www.myexperiment.org/\">MyExperiment</a>\n<a href=\"http://wiki.bioclipse.net/index.php?title=A_Meta_Language_for_Bioclipse (BSL)\">Bioclipse Scripting Language</a> scripts (though\nthere are no GUI elements yet):</p>\n\n<div class=\"language-javascript highlighter-rouge\"><div class=\"highlight\"><pre class=\"highlight\"><code><span class=\"o\">&gt;</span> <span class=\"nx\">myexperiment</span><span class=\"p\">.</span><span class=\"nf\">search</span><span class=\"p\">(</span><span class=\"dl\">\"</span><span class=\"s2\">RDF</span><span class=\"dl\">\"</span><span class=\"p\">)</span>\n<span class=\"p\">[</span><span class=\"mi\">921</span><span class=\"p\">,</span> <span class=\"mi\">928</span><span class=\"p\">,</span> <span class=\"mi\">889</span><span class=\"p\">]</span>\n\n<span class=\"o\">&gt;</span> <span class=\"nx\">myexperiment</span><span class=\"p\">.</span><span class=\"nf\">search</span><span class=\"p\">(</span><span class=\"dl\">\"</span><span class=\"s2\">Kabsch</span><span class=\"dl\">\"</span><span class=\"p\">)</span>\n<span class=\"p\">[</span><span class=\"mi\">937</span><span class=\"p\">]</span>\n</code></pre></div></div>\n\n<p>The returned lists give the workflow numbers for matching BSL scripts, which you can then simply download with:</p>\n\n<div class=\"language-javascript highlighter-rouge\"><div class=\"highlight\"><pre class=\"highlight\"><code><span class=\"o\">&gt;</span> <span class=\"kd\">var</span> <span class=\"nx\">file</span> <span class=\"o\">=</span> <span class=\"nx\">myexperiment</span><span class=\"p\">.</span><span class=\"nf\">downloadWorkflow</span><span class=\"p\">(</span><span class=\"mi\">937</span><span class=\"p\">)</span>\n<span class=\"nx\">ui</span><span class=\"p\">.</span><span class=\"nf\">open</span><span class=\"p\">(</span><span class=\"nx\">file</span><span class=\"p\">)</span>\n</code></pre></div></div>",
      "summary": "Some time ago I wrote about using Bioclipse to query to MyExperiment.org SPARQL end point . I think I had not mentioned that I have also written a manager to download MyExperiment Bioclipse Scripting Language scripts (though there are no GUI elements yet):",
      
      "date_published": "2009-11-04T00:00:00+00:00",
      "date_modified": "2026-03-19T00:00:00+00:00",
      "tags": ["bioclipse","rdf","sparql","myexperiment"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}