{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2009/09/08/updated-bioclipse-sdk-eclipse-35.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/hx839-f4h59",
      "url": "https://chem-bla-ics.linkedchemistry.info/2009/09/08/updated-bioclipse-sdk-eclipse-35.html",
      "title": "Updated Bioclipse SDK: the Eclipse 3.5 version",
      "content_html": "<p>Last Friday, the Bioclipse 2.1 development series moved to <a href=\"http://update.eclipse.org/downloads/drops/R-3.5-200906111540/eclipse-news-all.html\">Eclipse 3.5</a>,\nso I had to update the <a href=\"http://wiki.bioclipse.net/index.php?title=Bioclipse_SDK\">Bioclipse SDK</a> too, which\n<a href=\"https://chem-bla-ics.linkedchemistry.info/2009/08/13/making-bioclipse-development-easier-new.html\">we developed earlier <i class=\"fa-solid fa-recycle fa-xs\"></i></a>.</p>\n\n<p>With a new Eclipse version also comes new screenshots to talk you through the process of setting up a new\n<a href=\"http://wiki.bioclipse.net/index.php?title=How_to_make_a_manager_2\">Bioclipse manager</a> plugin.</p>\n\n<h3 id=\"step-1\">Step 1</h3>\n\n<p>Right click in your workspace navigator, and choose <em>New -&gt; Project</em>:</p>\n\n<p><img src=\"/assets/images/newBCProject.png\" alt=\"\" /></p>\n\n<h3 id=\"step-2\">Step 2</h3>\n\n<p>And select to create a new <em>Plug-in Project</em>:</p>\n\n<p><img src=\"/assets/images/newBCProject1.png\" alt=\"\" /></p>\n\n<h3 id=\"step-3\">Step 3</h3>\n\n<p>Give a project name, such as <em>net.bioclipse.xml</em>:</p>\n\n<p><img src=\"/assets/images/newBCProject2.png\" alt=\"\" /></p>\n\n<h3 id=\"step-4\">Step 4</h3>\n\n<p>Tune the <code class=\"language-plaintext highlighter-rouge\">ID</code>, <code class=\"language-plaintext highlighter-rouge\">Version</code>, <code class=\"language-plaintext highlighter-rouge\">Name</code>, and <code class=\"language-plaintext highlighter-rouge\">Provider</code> to your liking:</p>\n\n<p><img src=\"/assets/images/newBCProject3.png\" alt=\"\" /></p>\n\n<h3 id=\"step-5\">Step 5</h3>\n\n<p>Then select <em>Bioclipse Manager</em>:</p>\n\n<p><img src=\"/assets/images/newBCProject4.png\" alt=\"\" /></p>\n\n<h3 id=\"step-6\">Step 6</h3>\n\n<p>The next wizard page is specific the the Bioclipse manager, and asks a manager namespace, which will be used as prefix in the JavaScript Console.\nFor example, if I make the namespace <code class=\"language-plaintext highlighter-rouge\">xml</code>, then I will type <code class=\"language-plaintext highlighter-rouge\">xml.someMethod()</code> inside the JavaScript. The default manager name is typically\nOK by default:</p>\n\n<p><img src=\"/assets/images/newBCProject5.png\" alt=\"\" /></p>\n\n<p>Then click Finish and let Eclipse set up the new project.</p>\n\n<h3 id=\"step-7\">Step 7</h3>\n\n<p>Because I have not figured out yet how to add <em>Import-Package</em> to the <code class=\"language-plaintext highlighter-rouge\">MANIFEST.MF</code> programmatically, you will have to do this manually. Add\nthe last line of the next screenshot to the MANIFEST.MF of your new plugin:</p>\n\n<p><img src=\"/assets/images/newBCProject6.png\" alt=\"\" /></p>",
      "summary": "Last Friday, the Bioclipse 2.1 development series moved to Eclipse 3.5, so I had to update the Bioclipse SDK too, which we developed earlier .",
      "image": "https://chem-bla-ics.linkedchemistry.info/assets/images/newBCProject2.png",
      "date_published": "2009-09-08T00:00:00+00:00",
      "date_modified": "2026-03-07T00:00:00+00:00",
      "tags": ["bioclipse","eclipse","java"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}