{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2009/08/16/bioclipse-and-sparql-end-points.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/qtb5r-fxm04",
      "url": "https://chem-bla-ics.linkedchemistry.info/2009/08/16/bioclipse-and-sparql-end-points.html",
      "title": "Bioclipse and SPARQL end points",
      "content_html": "<p>Last week, there was a very interesting thread on the <a href=\"http://dbpedia.org/\">DBPedia</a> mailing list, on using Java for doing remote\n<a href=\"http://en.wikipedia.org/wiki/SPARQL\">SPARQL</a> queries. This was one of the features still missing in <a href=\"http://github.com/egonw/bioclipse.rdf/tree/master\">bioclipse.rdf</a>.\n<a href=\"http://dowhatimean.net/\">Richard Cyganiak</a> replied pointing the code in Jena which conveniently does this and which bioclipse.rdf is already using anyway. Next,\n<a href=\"http://iwis.cs.aau.dk/blog/4\">Fred Durao</a> even gave a full code example relieving me from any further research, resulting in\n<code class=\"language-plaintext highlighter-rouge\">sparqlRemote()</code> now implemented in the <code class=\"language-plaintext highlighter-rouge\">rdf</code> manager:</p>\n\n<div class=\"language-plaintext highlighter-rouge\"><div class=\"highlight\"><pre class=\"highlight\"><code>&gt; rdf.sparqlRemote(\n  \"http://dbpedia.org/sparql\",\n  \"select distinct ?Concept where{[] a ?Concept } LIMIT 10\"\n);\n[[http://dbpedia.org/ontology/Place], [http://dbpedia.org/ontology/Area],\n[http://dbpedia.org/ontology/City], [http://dbpedia.org/ontology/River],\n[http://dbpedia.org/ontology/Road], [http://dbpedia.org/ontology/Lake],\n[http://dbpedia.org/ontology/LunarCrater],\n[http://dbpedia.org/ontology/ShoppingMall], [http://dbpedia.org/ontology/Park],\n[http://dbpedia.org/ontology/SiteOfSpecialScientificInterest]]\n</code></pre></div></div>\n\n<p>I reported earlier <a href=\"https://chem-bla-ics.linkedchemistry.info/2009/02/dbpedia-lookup-and-autocomplete-of.html\">two example SPARQL queries for chemistry <i class=\"fa-solid fa-recycle fa-xs\"></i></a>,\nwhich can now be rewritten as Bioclipse scripts:</p>\n\n<script src=\"https://gist.github.com/168582.js\"></script>\n\n<p>and</p>\n\n<script src=\"https://gist.github.com/168583.js\"></script>",
      "summary": "Last week, there was a very interesting thread on the DBPedia mailing list, on using Java for doing remote SPARQL queries. This was one of the features still missing in bioclipse.rdf. Richard Cyganiak replied pointing the code in Jena which conveniently does this and which bioclipse.rdf is already using anyway. Next, Fred Durao even gave a full code example relieving me from any further research, resulting in sparqlRemote() now implemented in the rdf manager:",
      
      "date_published": "2009-08-16T00:00:00+00:00",
      "date_modified": "2025-11-29T00:00:00+00:00",
      "tags": ["bioclipse","sparql","rdf","dbpedia"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}