{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2009/07/08/jchempaint-primary-moving-to-git.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/vrevg-x5008",
      "url": "https://chem-bla-ics.linkedchemistry.info/2009/07/08/jchempaint-primary-moving-to-git.html",
      "title": "JChemPaint-Primary moving to Git",
      "content_html": "<p>I knew it was going to be painful, but making the <a href=\"http://cdk.svn.sourceforge.net/viewvc/cdk/cdk/branches/jchempaint-primary/\">jchempaint-primary branch</a>\na proper patch to the CDK master branch <strong>is</strong> painful. I am working my way towards setting up <a href=\"http://pele.farmbio.uu.se/cgi-bin/gitweb.cgi?p=jchempaint-primary.git;a=summary\">a git repository</a>\n(<strong>IMPORTANT</strong>: these patches are <strong>not</strong> final yet, and their history <strong>will</strong> change, as I am <em>rebasing</em> regularly to make cleaner patches! Making\ncopies is save, but please hold of any forking and/or branching on top of it until it is final. Thanx.) for the patch, with split ups of the various\nparts into reviewable blobs:</p>\n\n<p><img src=\"/assets/images/jcpGit.png\" alt=\"\" /></p>\n\n<p>As you can see (when you click on the image to enlarge it), I have more or less finished the first drafts of the patch sets (see\n<a href=\"https://sourceforge.net/apps/mediawiki/cdk/index.php?title=JChemPaint_Primary_Patches\">this wiki page</a>) 0-other, 1-render, 2-renderbasic,\n9-rendercontrol, and 6-control. The last one does not actually compile properly yet, as I need to abstract an IRenderer interface first.</p>\n\n<p>There are several patch sets that I am still porting, but I hope to finish that this week, after which I’ll continue working on the new\n<code class=\"language-plaintext highlighter-rouge\">IEdit</code> framework in the controller modules recently set up by Arvid.</p>\n\n<p>It will take some time before these patches actually get submitted for review, as there is quite some PMD, DocCheck and unit testing\nwork to be done, as is clear from the <a href=\"http://pele.farmbio.uu.se/nightly-jcp/\">Nightly running on the SVN branch</a>.</p>\n\n<p>Finally, I like to note that this git repository collapses a lot of work done by developers at both Uppsala University (Arvid, Ola and me)\nand the EBI (<a href=\"http://gilleain.blogspot.com/\">Gilleain</a>, Stefan and now Mark). While the above git history will not reflect those contributions,\nyou can recover this information from the <a href=\"https://chem-bla-ics.linkedchemistry.info/2009/06/30/making-patches-attribution-copyright.html\">copyright headers <i class=\"fa-solid fa-recycle fa-xs\"></i></a>.\nI also like to thank Lars and Sam for their valuable testing!</p>",
      "summary": "I knew it was going to be painful, but making the jchempaint-primary branch a proper patch to the CDK master branch is painful. I am working my way towards setting up a git repository (IMPORTANT: these patches are not final yet, and their history will change, as I am rebasing regularly to make cleaner patches! Making copies is save, but please hold of any forking and/or branching on top of it until it is final. Thanx.) for the patch, with split ups of the various parts into reviewable blobs:",
      "image": "https://chem-bla-ics.linkedchemistry.info/assets/images/jcpGit.png",
      "date_published": "2009-07-08T00:00:00+00:00",
      "date_modified": "2026-09-27T00:00:00+00:00",
      "tags": ["jchempaint","git","cdk"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}