{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2009/02/21/bioclipse2-scripting-2-searching.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/fja51-1ga17",
      "url": "https://chem-bla-ics.linkedchemistry.info/2009/02/21/bioclipse2-scripting-2-searching.html",
      "title": "Bioclipse2 Scripting #2: searching PubChem",
      "content_html": "<p>This week I have been porting the PubChem plugin for <a href=\"http://www.bioclipse.net/\">Bioclipse</a> 1.2 to the new manager-based architecture. While still working on the Wizards,\nyou can run the following JavaScript in Bioclipse2 from SVN and from the next beta (*):</p>\n\n<script src=\"https://gist.github.com/67462.js\"></script>\n\n<p>*) There was some confusion on the <em>two</em> beta Bioclipse2 releases so far. Some people expected a release without any bugs left. That release is what we planned to call a\n<em>Release Candidate</em>. We agree that the first two betas at least turned out to be more alpha than we actually hoped, and we thank everyone who has given these releases a\ngo. Those who tried several development releases of Bioclipse2 saw a lot of ongoing development, and we are fixing\n<a href=\"http://bugs.bioclipse.net/\">any bug reported</a> on these releases. So, do not hesitate in reporting bugs!</p>\n\n<p>Earlier in this series:</p>\n\n<ul>\n  <li><a href=\"https://chem-bla-ics.linkedchemistry.info/2008/10/25/bioclipse2-scripting-1-from-smiles-to.html\">Bioclipse2 Scripting #1: from SMILES to a UFF optimized structure in Jmol <i class=\"fa-solid fa-recycle fa-xs\"></i></a></li>\n  <li><a href=\"https://chem-bla-ics.linkedchemistry.info/2008/11/04/next-generation-asynchronous.html\">Next generation asynchronous webservices #2 <i class=\"fa-solid fa-recycle fa-xs\"></i></a></li>\n  <li><a href=\"https://chem-bla-ics.linkedchemistry.info/2008/11/20/scripting-jchempaint.html\">Scripting JChemPaint <i class=\"fa-solid fa-recycle fa-xs\"></i></a></li>\n  <li><a href=\"https://chem-bla-ics.linkedchemistry.info/2009/02/15/bioclipse-for-cdk-developers-1.html\">Bioclipse for CDK Developers #1 <i class=\"fa-solid fa-recycle fa-xs\"></i></a></li>\n</ul>",
      "summary": "This week I have been porting the PubChem plugin for Bioclipse 1.2 to the new manager-based architecture. While still working on the Wizards, you can run the following JavaScript in Bioclipse2 from SVN and from the next beta (*):",
      
      "date_published": "2009-02-21T00:00:00+00:00",
      "date_modified": "2025-11-29T00:00:00+00:00",
      "tags": ["bioclipse","pubchem","javascript"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}