{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2007/11/05/glueing-biomoby-services-together-with.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/vkwhn-4tw77",
      "url": "https://chem-bla-ics.linkedchemistry.info/2007/11/05/glueing-biomoby-services-together-with.html",
      "title": "Glueing BioMoby services together with JavaScript in Bioclipse",
      "content_html": "<p><a href=\"http://www.blogger.com/profile/10379047094508592338\">Ola</a> has been doing a good job of integrating\n<a href=\"http://biomoby.org/\">BioMoby</a> support into Bioclipse. Earlier he completed a GUI for running BioMOBY\nservices, and added more recently <a href=\"http://bioclipse.blogspot.com/2007/11/scripting-biomoby-in-bioclipse.html\">a JavaScript wrapper too</a>,\nusing the <a href=\"http://wiki.bioclipse.net/index.php?title=Bc_rhino\">Rhino plugin</a> developed by Johannes.</p>\n\n<p>For example:</p>\n\n<div class=\"language-javascript highlighter-rouge\"><div class=\"highlight\"><pre class=\"highlight\"><code><span class=\"nx\">console</span> <span class=\"o\">=</span> <span class=\"nb\">Packages</span><span class=\"p\">.</span><span class=\"nx\">net</span><span class=\"p\">.</span><span class=\"nx\">bioclipse</span><span class=\"p\">.</span><span class=\"nx\">util</span><span class=\"p\">.</span><span class=\"nx\">BioclipseConsole</span><span class=\"p\">;</span>\n<span class=\"nx\">moby</span> <span class=\"o\">=</span> <span class=\"nb\">Packages</span><span class=\"p\">.</span><span class=\"nx\">net</span><span class=\"p\">.</span><span class=\"nx\">bioclipse</span><span class=\"p\">.</span><span class=\"nx\">biomoby</span><span class=\"p\">.</span><span class=\"nx\">ui</span><span class=\"p\">.</span><span class=\"nx\">scripts</span><span class=\"p\">.</span><span class=\"nx\">MobyServiceScripting</span><span class=\"p\">;</span>\n<span class=\"nx\">biojava</span> <span class=\"o\">=</span> <span class=\"nb\">Packages</span><span class=\"p\">.</span><span class=\"nx\">net</span><span class=\"p\">.</span><span class=\"nx\">bioclipse</span><span class=\"p\">.</span><span class=\"nx\">biojava</span><span class=\"p\">.</span><span class=\"nx\">scripts</span><span class=\"p\">.</span><span class=\"nx\">BioJavaScripting</span><span class=\"p\">;</span>\n\n<span class=\"nx\">prot</span><span class=\"o\">=</span><span class=\"nx\">moby</span><span class=\"p\">.</span><span class=\"nf\">downloadGenbank</span><span class=\"p\">(</span><span class=\"dl\">\"</span><span class=\"s2\">NCBI_GI</span><span class=\"dl\">\"</span><span class=\"p\">,</span><span class=\"dl\">\"</span><span class=\"s2\">111076</span><span class=\"dl\">\"</span><span class=\"p\">);</span>\n<span class=\"nx\">seq</span><span class=\"o\">=</span><span class=\"nx\">biojava</span><span class=\"p\">.</span><span class=\"nf\">parseString</span><span class=\"p\">(</span><span class=\"nx\">prot</span><span class=\"p\">);</span>\n<span class=\"nx\">fasta</span><span class=\"o\">=</span><span class=\"nx\">biojava</span><span class=\"p\">.</span><span class=\"nf\">toFasta</span><span class=\"p\">(</span><span class=\"nx\">seq</span><span class=\"p\">);</span>\n\n<span class=\"nx\">console</span><span class=\"p\">.</span><span class=\"nf\">writeToConsole</span><span class=\"p\">(</span><span class=\"nx\">fasta</span><span class=\"p\">);</span>\n</code></pre></div></div>\n\n<p>Today, he explained <a href=\"http://bioclipse.blogspot.com/2007/11/adding-scripting-commands-to-bioclipse.html\">how to create convenience JavaScript shortcuts</a>,\nto reduce the typing.</p>\n\n<p>Screenshots and status of the Bioclipse-BioMoby work is <a href=\"http://wiki.bioclipse.net/index.php?title=BioMoby_plugin\">available from the wiki</a>.</p>",
      "summary": "Ola has been doing a good job of integrating BioMoby support into Bioclipse. Earlier he completed a GUI for running BioMOBY services, and added more recently a JavaScript wrapper too, using the Rhino plugin developed by Johannes.",
      
      "date_published": "2007-11-05T00:00:00+00:00",
      "date_modified": "2007-11-05T00:00:00+00:00",
      "tags": ["bioclipse","javascript"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}