{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2007/06/16/payed-summer-jobs-in-chemoinformatics.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/yt9bg-zdp74",
      "url": "https://chem-bla-ics.linkedchemistry.info/2007/06/16/payed-summer-jobs-in-chemoinformatics.html",
      "title": "Payed summer jobs in chemoinformatics",
      "content_html": "<p>Last year the <a href=\"http://www.programmeerzomer.nl/\">Programmeerzomer.nl</a> sponsored one summer student to work on <a href=\"http://www.bioclipse.net/\">Bioclipse</a>\n(see the <a href=\"https://chem-bla-ics.linkedchemistry.info/2006/06/20/dutch-summer-of-code-sponsors.html\">announcement <i class=\"fa-solid fa-recycle fa-xs\"></i></a>). The Programmeerzomer is much like the\n<a href=\"http://kemistry-desktop.blogspot.com/2007/04/chemical-semantic-desktop.html\">Google Summer of Code where I mentor Alexandr</a>. However, it is much\nsmaller and oriented at just the <a href=\"http://en.wikipedia.org/wiki/Netherlands\">NL area</a>: both the student and the mentor needs to be Dutch,\nbut the opensource project does not.</p>\n\n<p>Rob worked last year on a <a href=\"http://wiki.bioclipse.net/index.php?title=Ghemical_plugin\">Ghemical plugin for Bioclipse</a> (see\n<a href=\"http://www.programmeerzomer.nl/interviews/rob_schellhorn/_rp_links1_elementId/1_1257\">this interview in Dutch</a>). The architecture for doing\ncalculations (the Compute plugin) is still being used within several other plugins. This year I got assigned two students: one for\nBioclipse and one for <a href=\"http://www.jmol.org/\">Jmol</a>.</p>\n\n<p>I have no idea at this moment what ideas the students picked from the lists in the wikis (see the\n<a href=\"http://wiki.jmol.org:81/index.php/ProgrammeerZomer\">Jmol project idea</a> and <a href=\"http://wiki.bioclipse.net/index.php?title=SummerOfCode\">Bioclipse idea</a>\nlists). There is a meeting scheduled in the 25th.</p>\n\n<p>The ideas include:</p>\n<ul>\n  <li>Jmol\n    <ul>\n      <li>a SWT widget for Eclipse RCP-based application</li>\n      <li><a href=\"http://wiki.jmol.org:81/index.php/SoCPharmacophores\">Pharmacophore rendering</a></li>\n      <li>Support for PDB in XML</li>\n      <li><a href=\"http://wiki.jmol.org:81/index.php/SoCAjaxJS\">Ajax-enabled JavaScript library</a> (for the applet)</li>\n    </ul>\n  </li>\n  <li>Bioclipse\n    <ul>\n      <li><a href=\"http://wiki.bioclipse.net/index.php?title=Validating_CML_editor\">a validating CML editor</a></li>\n      <li><a href=\"http://wiki.bioclipse.net/index.php?title=Gromacs_plugin\">a GROMACS plugin</a></li>\n      <li><a href=\"http://wiki.bioclipse.net/index.php?title=Sequence_editor\">a sequence editor</a></li>\n      <li><a href=\"http://wiki.bioclipse.net/index.php?title=SummerOfCode\">webservices over Jabber’s XMPP</a></li>\n      <li>Beanshell and Jython scripting plugins</li>\n    </ul>\n  </li>\n</ul>\n\n<p>If you have a suggestion, it would be much appreciated if you can add that to the wiki pages linked above. Make sure to leave a comment to this blog item too, announcing the new idea!</p>",
      "summary": "Last year the Programmeerzomer.nl sponsored one summer student to work on Bioclipse (see the announcement ). The Programmeerzomer is much like the Google Summer of Code where I mentor Alexandr. However, it is much smaller and oriented at just the NL area: both the student and the mentor needs to be Dutch, but the opensource project does not.",
      
      "date_published": "2007-06-16T00:00:00+00:00",
      "date_modified": "2025-07-30T00:00:00+00:00",
      "tags": ["jmol","bioclipse","gsoc"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}
