{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2007/02/19/pimp-my-javadoc.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/bpnj5-40e86",
      "url": "https://chem-bla-ics.linkedchemistry.info/2007/02/19/pimp-my-javadoc.html",
      "title": "Pimp my JavaDoc",
      "content_html": "<p><a href=\"http://miningdrugs.blogspot.com/\">Jörg</a>’s PhD book <em>Data Mining und Graph Mining auf molekularen Graphen - Chemoinformatik und\nmolekulare Kodierungen für ADME/Tox-QSAR-Analysen</em> has a dump of the JavaDoc of the <code class=\"language-plaintext highlighter-rouge\">GroupContributionPredictor</code> in\n<a href=\"http://joelib.sf.net/\">JOELib</a> (Figure 3.2, page 43). There are two nice things to the shown JavaDoc: 1. it has links to\n<a href=\"http://www.wikipedia.org/\">Wikipedia</a>; 2. it has a Further Reading section.</p>\n\n<p>Now, the <a href=\"http://cdk.sf.net/\">CDK</a> already links to a bibliography for some time now. However, it would just give a BibTex\nkey, and link to a webpage created from a <a href=\"http://bibtexml.sf.net/\">BibTeXML</a> file in which we store all references\n(<a href=\"http://cdk.svn.sourceforge.net/viewvc/cdk/trunk/cdk/doc/refs/cheminf.bibx?view=log\">cdk/doc/refs/cheminf.bibx</a>).\nPutting the full citation inline makes the JavaDoc more informative, but I wanted to preserve the <code class=\"language-plaintext highlighter-rouge\">@cdk.cite</code>\nmechanism we were using.</p>\n\n<p>This weekend I hacked up a nice CDKCiteDoclet that would read the BibTeXML file with <a href=\"http://www.xom.nu/\">XOM</a>,\nand convert items to HTML to put into the pimped JavaDoc:</p>\n\n<p><img src=\"/assets/images/pimpedJavaDoc.png\" alt=\"\" /></p>",
      "summary": "Jörg’s PhD book Data Mining und Graph Mining auf molekularen Graphen - Chemoinformatik und molekulare Kodierungen für ADME/Tox-QSAR-Analysen has a dump of the JavaDoc of the GroupContributionPredictor in JOELib (Figure 3.2, page 43). There are two nice things to the shown JavaDoc: 1. it has links to Wikipedia; 2. it has a Further Reading section.",
      "image": "https://chem-bla-ics.linkedchemistry.info/assets/images/pimpedJavaDoc.png",
      "date_published": "2007-02-19T00:00:00+00:00",
      "date_modified": "2025-02-15T00:00:00+00:00",
      "tags": ["cdk","javadoc","literature"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}