{ "version": "https://jsonfeed.org/version/1.1", "title": "chem-bla-ics", "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.", "home_page_url": "https://chem-bla-ics.linkedchemistry.info/", "feed_url": "https://chem-bla-ics.linkedchemistry.info/2006/09/15/chemoblogs-1.json", "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png", "language": "en", "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286", "_orcid": "0000-0001-7542-0286" } ], "items": [ { "id": "https://doi.org/10.59350/zagc3-qnj56", "url": "https://chem-bla-ics.linkedchemistry.info/2006/09/15/chemoblogs-1.html", "title": "Chemo::Blogs #1", "content_html": "

There are a number of links I wanted to blog about, but never really had time for yet. Here’s a short review of a them.\nBio::Blogs is a series of summary/review articles of bio related blogs, and definately\nworth putting in your aggregator. Maybe someone is interested in setting up a Chemo::Blogs for\nchemistry blogs?

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My del.icio.us (social bookmarking) network informed me about\nHTML Slidy, an XHTML based PowerPoint replacement. Being true XHTML, it allows\nembedding Jmol, JChemPaint and any other applet. Embed your pieces\nof CML, MathML and SVG (or any other namespace) and you no longer\nhave data loss .

\n\n

Nucleic Acids Research recently had a special issue on webservers\n(DOI:10.1093/nar/gkl385), in which Taverna \nwas featured (DOI:10.1093/nar/gkl320). Just want to mention once more that Taverna has\na chemoinformatics module: CDK-Taverna.

\n\n

Day and Motherwell published the paper An Experiment in Crystal Structure Prediction by Popular Vote\n(DOI:10.1021/cg060313r). It links to a openaccess website\nto participate yourself. This is one way in which one have tigher integration of the internet with old-fashion publishing.

\n\n

And some minor notes: a video tutorial was put online in this blog\nthat shows how Jmol is inserted on a Moodle page. And, as Pierre reminded me,\nThe Life Sciences Semantic Web is Full of Creeps! (DOI:10.1093/bib/bbl025),\nwhich puts me in an identity crisis: hacker, chemist or creep. Mmmm…

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References

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Day, G. M., & Motherwell, W. D. S. (2006). An Experiment in Crystal Structure Prediction by Popular Vote. Crystal Growth & Design, 6(9), 1985–1990. https://doi.org/10.1021/cg060313r CrossRef Scholia
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EDITORIAL. (2006). Nucleic Acids Research, 34(Web Server), W1–W1. https://doi.org/10.1093/nar/gkl385 CrossRef Scholia
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Good, B. M. (2006). The Life Sciences Semantic Web is Full of Creeps! Briefings in Bioinformatics, 7(3), 275–286. https://doi.org/10.1093/bib/bbl025 CrossRef Scholia
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Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M. R., Li, P., & Oinn, T. (2006). Taverna: a tool for building and running workflows of services. Nucleic Acids Research, 34(Web Server), W729–W732. https://doi.org/10.1093/nar/gkl320 CrossRef Scholia
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", "summary": "There are a number of links I wanted to blog about, but never really had time for yet. Here’s a short review of a them. Bio::Blogs is a series of summary/review articles of bio related blogs, and definately worth putting in your aggregator. Maybe someone is interested in setting up a Chemo::Blogs for chemistry blogs?", "date_published": "2006-09-15T00:00:00+00:00", "date_modified": "2025-04-20T00:00:00+00:00", "tags": ["taverna","cdk"], "_references": [ { "url": "https://doi.org/10.1093/NAR/GKL385", "doi": "10.1093/NAR/GKL385" } , { "url": "https://doi.org/10.1093/NAR/GKL320", "doi": "10.1093/NAR/GKL320" } , { "url": "https://doi.org/10.1093/BIB/BBL025", "doi": "10.1093/BIB/BBL025" } , { "url": "https://doi.org/10.1021/CG060313R", "doi": "10.1021/CG060313R" } ], "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ] } ] }