{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "chem-bla-ics",
  "description": "Chemblaics (pronounced chem-bla-ics) is the science that uses open science and computers to solve problems in chemistry, biochemistry and related fields.",
  "home_page_url": "https://chem-bla-ics.linkedchemistry.info/",
  "feed_url": "https://chem-bla-ics.linkedchemistry.info/2006/04/10/getting-jmols-cartoon-on-to-work-in.json",
  "icon": "https://chem-bla-ics.linkedchemistry.info/assets/images/chem-bla-ics_logo.png",
  "language": "en",
  "authors": [
    {
      "name": "Egon Willighagen",
      "url": "https://orcid.org/0000-0001-7542-0286",
      "_orcid": "0000-0001-7542-0286"
    }
  ],
  "items": [

    {
      "id": "https://doi.org/10.59350/7nz8x-a7q09",
      "url": "https://chem-bla-ics.linkedchemistry.info/2006/04/10/getting-jmols-cartoon-on-to-work-in.html",
      "title": "Getting Jmol's 'cartoon on' to work in Bioclipse",
      "content_html": "<p><a href=\"https://web.archive.org/web/20060420034219/http://www.bioclipse.net/\">Bioclipse</a> 1.0 is to be released in May, and the cartoon on script command is\nstill not working in the <a href=\"http://www.jmol.org/\">Jmol</a> viewer. For those who do not know yet, <a href=\"http://www.eclipse.org/\">Bioclipse</a> is a cool Eclipse\nRCP based Java chemo-and bioinformatics workbench. To have a better idea what goes on inside Bioclipse, I wrote a new BioPolymer tree to show me the\nstrands in the protein. After <a href=\"http://bioclipse.blogspot.com/\">Ola</a> wrote code to show properties for IChemObject’s, I extended it with PDB properties\nfor the atoms, strands and monomers.</p>\n\n<p>The contents of the ChemTree view in the middle and the Properties view below that look fine:</p>\n\n<p><img src=\"https://media.springernature.com/full/springer-static/image/art%3A10.1186%2F1471-2105-8-59/MediaObjects/12859_2006_Article_1431_Fig4_HTML.jpg?as=webp\" alt=\"\" /></p>\n\n<p>So I’ll have to dig a bit further.</p>",
      "summary": "Bioclipse 1.0 is to be released in May, and the cartoon on script command is still not working in the Jmol viewer. For those who do not know yet, Bioclipse is a cool Eclipse RCP based Java chemo-and bioinformatics workbench. To have a better idea what goes on inside Bioclipse, I wrote a new BioPolymer tree to show me the strands in the protein. After Ola wrote code to show properties for IChemObject’s, I extended it with PDB properties for the atoms, strands and monomers.",
      
      "date_published": "2006-04-10T00:00:00+00:00",
      "date_modified": "2024-05-26T00:00:00+00:00",
      "tags": ["bioclipse","jmol","protein"],
      
      
      
      
      
      
        "authors": [ { "name": "Egon Willighagen", "url": "https://orcid.org/0000-0001-7542-0286" } ]
      
    }

  ]
}